Non-Coding RNA Search

Ss1.1-Lng1-LNG010070E03.5

Sequence:


               
               TTCAAGTGTGGTACATAGTGTTTATGGGAAATAAAACATATTGGGGTGACTTTCCTTTTT
AGATTCCCTAAGAATTAAAGTTAGAAACAACTGCAGAGTAAAATGTTTTACCATAATGTT
TCATTAAATTATACCCCAGAAAGCATAACTGATTCTCGAATGTTTCTGAAAGAACTGATT
TTGACACCACTGTAGCACCAAAATTCCCTTGTCAAACAGATGCCGTCCCTGTAAAACTAT
CCAAAACAAAAGGAGTTTATGACATAGCATCTGTTTCTGCGATAGATGGCTGAGCTAAAA
CGGTTTTGTTTCCTTTTTACAGAATAGCCCTGAATGCCTCCTTTTATTTTAATTCATTAT
GTTTCCATATCCCTTTAAAGGAGACATTAAAACATTTGATATCTTTGGACCATAAATCCC
TAATGAAGGAATAAAGTAAGTACTACTCAGTGGCACCACCTGCGGTTACTACCGGCGGTG
GAATATGTCTTTTCTAGCACCATCCCCAAAAGCAGTCATTTAAAACTGTCCAAATGGATT
AACAAATTAAAACTCACAAACGGAATTAAAAAGATTGAAATGTCAGCTCAAAATTAAAAT
AACCAGTTCGAGCTTCATAGCGTTAGCATCGTATCCACCACACTCCATTTTTGCAGCATC
TTTTCTTTGTGGCTCATACTCTGTTTCTTCGGGTTACACGTATGGATTTTAAATTGCTTG
CCATGCCTCTCCCCCACTCCGCCACCTCAGCTCTATTCGCTGTTCTCTGAAGCGGTGGTA
GAGTTCCTGTGAACTGCCATCTCTACCAATGCTTTATTGATTCACTGTTAGATCTTTCAA
AATCTAGTTGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCAAGTGTGGTACATAGTGTTTATGGGAAATAAAACATATTGGGGTGACTTTCCTTTTT
AGATTCCCTAAGAATTAAAGTTAGAAACAACTGCAGAGTAAAATGTTTTACCATAATGTT
TCATTAAATTATACCCCAGAAAGCATAACTGATTCTCGAATGTTTCTGAAAGAACTGATT
TTGACACCACTGTAGCACCAAAATTCCCTTGTCAAACAGATGCCGTCCCTGTAAAACTAT
CCAAAACAAAAGGAGTTTATGACATAGCATCTGTTTCTGCGATAGATGGCTGAGCTAAAA
CGGTTTTGTTTCCTTTTTACAGAATAGCCCTGAATGCCTCCTTTTATTTTAATTCATTAT
GTTTCCATATCCCTTTAAAGGAGACATTAAAACATTTGATATCTTTGGACCATAAATCCC
TAATGAAGGAATAAAGTAAGTACTACTCAGTGGCACCACCTGCGGTTACTACCGGCGGTG
GAATATGTCTTTTCTAGCACCATCCCCAAAAGCAGTCATTTAAAACTGTCCAAATGGATT
AACAAATTAAAACTCACAAACGGAATTAAAAAGATTGAAATGTCAGCTCAAAATTAAAAT
AACCAGTTCGAGCTTCATAGCGTTAGCATCGTATCCACCACACTCCATTTTTGCAGCATC
TTTTCTTTGTGGCTCATACTCTGTTTCTTCGGGTTACACGTATGGATTTTAAATTGCTTG
CCATGCCTCTCCCCCACTCCGCCACCTCAGCTCTATTCGCTGTTCTCTGAAGCGGTGGTA
GAGTTCCTGTGAACTGCCATCTCTACCAATGCTTTATTGATTCACTGTTAGATCTTTCAA
AATCTAGTTGTC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               41-160, - strand, RNAz p=0.53797
               

               
               241-439, - strand, RNAz p=0.977916

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-160, - strand, RNAz p=0.53797
               

               
               241-439, - strand, RNAz p=0.977916

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-851, gnl|bosTau2|chr18 (35675770-35674915)
               

               
               2-851, gnl|Hg17|chr19 (37540155-37541001)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-851, gnl|bosTau2|chr18 (35675770-35674915)
               

               
               2-851, gnl|Hg17|chr19 (37540155-37541001)

	41-160, - strand, RNAz p=0.53797
	241-439, - strand, RNAz p=0.977916

	2-851, gnl\|bosTau2\|chr18 (35675770-35674915)
	2-851, gnl\|Hg17\|chr19 (37540155-37541001)