Non-Coding RNA Search

Ss1.1-Lng1-LNG010071F05.5

Sequence:


               
               GCATCGAGAGCGGCCGGATGACCCACCACCACCCCACAGCTACCTGGGAGCCCTTGTGTC
TGCTCTTTTTACAGCCTATGCTGTGAATGGCAAGCCACCCCGGCAGTGGGGAAAAGGACT
GATGGAGGTGCTGCCAGAAGCTAAAAAGTACATTGTCCAATCAGGCTACTTTGTGGAGCA
GAATCTTCAACACTGGTCTTACTTCCAAGACCAATGGGAAAAGTACCTAAAACTCAGAGG
GATTTGGGATGGCAAATCAGCCCCTACCTTCCCGAAGCCCTTTGATGTCAAGGAGAGGGA
TCAGTTCTACACCTCCGTGAGCTACTCTGGCTGGGGTGGCAGTAGTGGACATGATGCCCC
CATGATTGCCTATGATGCCATCCTGGCTGCAGGAGACTCCTGGAAGGAGCTTGCCCACCG
AGCCTTTTTTCACGGTGGAGACAGTGATTCGACAGCTGCCATTGCTGGCTGCTGGTGGGG
AGTGATGTACGGTTTTAAAGGAGTGAGTCCTGCCAACTATGAGAAGCTAGAATACAGAAA
TCGGCTGGAAGAGACAGCTAGGGCTTTGTTTTCTCTTAGATCAAAGGAAGAACTGTAATT
ACCCTTTAGGGAGAAGTGTTTCTGGTGGTTTCTACTCTTGTGTAGTCCCTTTTATGCTCA
GTTTCACTTTTTTCAAAGAAGTCAAGAGTGTTAACCTTGTACTCAGGGAATTTTGAGATA
ACAGTCCCTTGGGTACCTGAAGCTCAGTCTTTCCAAACTTATCCTGTCCTTCCCCATTGC
CCGGAATCTTTCCCTCTTCCTATCCTGAAGAGTCTTTATTTCAGTTGATGGGGTCAGTGT
ATCCCAAATTAGAACTCTTGTAGCCTCATATTTGAGGCTTCATTTTCACCATCTAATCTT
TCCCTAGGTTTTTTCTTTTTGTTTCATATTGGATTT------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GGACTCAGTCCTTATGGGTTATCTGCATAAGGCACTCAGAGTTGTCCC
CCATGAGCGGCAAGCAAACATGGGATGTTTATCCACCAGCTGCCATCTGATGTTGATGGA
GGACCACTCATGGGATGCTAACTCCTTGGTGCCTCCCTGGCCTGCATGTTGTGCACCACA
TTTGGGTGTCTTCAGGTAAATATGCAGAGGGAATTCCTTTTGGCTCAGTGAGTGAAGCAT
CCAGTCTTGTTGCTGCAGCAGCTTGGGCTGATGCTGTGGCAAGGGTTTGATCCTCGGCCC
AGGAATTTCCACCCGCCGGCATGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCATCGAGAGCGGCCGGATGACCCACCACCACCCCACAGCTACCTGGGAGCCCTTGTGTC
TGCTCTTTTTACAGCCTATGCTGTGAATGGCAAGCCACCCCGGCAGTGGGGAAAAGGACT
GATGGAGGTGCTGCCAGAAGCTAAAAAGTACATTGTCCAATCAGGCTACTTTGTGGAGCA
GAATCTTCAACACTGGTCTTACTTCCAAGACCAATGGGAAAAGTACCTAAAACTCAGAGG
GATTTGGGATGGCAAATCAGCCCCTACCTTCCCGAAGCCCTTTGATGTCAAGGAGAGGGA
TCAGTTCTACACCTCCGTGAGCTACTCTGGCTGGGGTGGCAGTAGTGGACATGATGCCCC
CATGATTGCCTATGATGCCATCCTGGCTGCAGGAGACTCCTGGAAGGAGCTTGCCCACCG
AGCCTTTTTTCACGGTGGAGACAGTGATTCGACAGCTGCCATTGCTGGCTGCTGGTGGGG
AGTGATGTACGGTTTTAAAGGAGTGAGTCCTGCCAACTATGAGAAGCTAGAATACAGAAA
TCGGCTGGAAGAGACAGCTAGGGCTTTGTTTTCTCTTAGATCAAAGGAAGAACTGTAATT
ACCCTTTAGGGAGAAGTGTTTCTGGTGGTTTCTACTCTTGTGTAGTCCCTTTTATGCTCA
GTTTCACTTTTTTCAAAGAAGTCAAGAGTGTTAACCTTGTACTCAGGGAATTTTGAGATA
ACAGTCCCTTGGGTACCTGAAGCTCAGTCTTTCCAAACTTATCCTGTCCTTCCCCATTGC
CCGGAATCTTTCCCTCTTCCTATCCTGAAGAGTCTTTATTTCAGTTGATGGGGTCAGTGT
ATCCCAAATTAGAACTCTTGTAGCCTCATATTTGAGGCTTCATTTTCACCATCTAATCTT
TCCCTAGGTTTTTTCTTTTTGTTTCATATTGGATTT------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GGACTCAGTCCTTATGGGTTATCTGCATAAGGCACTCAGAGTTGTCCC
CCATGAGCGGCAAGCAAACATGGGATGTTTATCCACCAGCTGCCATCTGATGTTGATGGA
GGACCACTCATGGGATGCTAACTCCTTGGTGCCTCCCTGGCCTGCATGTTGTGCACCACA
TTTGGGTGTCTTCAGGTAAATATGCAGAGGGAATTCCTTTTGGCTCAGTGAGTGAAGCAT
CCAGTCTTGTTGCTGCAGCAGCTTGGGCTGATGCTGTGGCAAGGGTTTGATCCTCGGCCC
AGGAATTTCCACCCGCCGGCATGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61883947|ref|XP_604093.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61883947|ref|XP_604093.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               192-310, - strand, RNAz p=0.548248
               

               
               391-510, + strand, RNAz p=0.79972

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               192-310, - strand, RNAz p=0.548248
               

               
               391-510, + strand, RNAz p=0.79972

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               192-924, gnl|bosTau2|chr1 (29788310-29789048)
               

               
               192-924, gnl|Hg17|chr3 (120788997-120789717)
               

               
               192-924, gnl|Mm7|chr16 (38153328-38152606)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               192-924, gnl|bosTau2|chr1 (29788310-29789048)
               

               
               192-924, gnl|Hg17|chr3 (120788997-120789717)
               

               
               192-924, gnl|Mm7|chr16 (38153328-38152606)

	192-310, - strand, RNAz p=0.548248
	391-510, + strand, RNAz p=0.79972

	192-924, gnl\|bosTau2\|chr1 (29788310-29789048)
	192-924, gnl\|Hg17\|chr3 (120788997-120789717)
	192-924, gnl\|Mm7\|chr16 (38153328-38152606)