Non-Coding RNA Search

Ss1.1-Lng1-LNG010076F02.5

Sequence:


               
               CTGTCATGTCTTTACAAATGTAATACAGTATCATGTTAGCCTGTTTAGTATCAGTAGAAC
CGCATTCGTACTTTCAAATGATGTTTCCTCACCTAGCGAATAAATAATTAACTGAAGAAT
TCTAATCATGTGAATTATAAGGAAGAATATCACCGTTTCCCTCCATCTGTTTAAAATGTT
TGAAGAGAATTTGCTGCCGCCTGATATCCTAAAAGAAATTGATCATACTTTTCCTGTAAT
AAATGTTGTTCTGACAGTAAAGCATTAGTAACCAATTGATAACCTAGCAACAATATTGTG
ATCTCTTTAGATAATTAATCTTAGCTATTTTCCTGTCAGAAGCAACAGTGCTCGATTTTA
TGTTGAGCCAGAAAGATTGCCAGTTTTGAAAATTAAAAAGCATTCCTTTTATATTATTCA
TTCCAGTAACAATTTATGATGGCGCATTTAGCGGCTGAACGCTTGTCAACAAACGTAATT
ATGTTTCGATATAAACAAGATTGGTGGTTTGACTGTGCTGCTCCATCTTTGTTGAGAATG
TTTTGATTTAGGTTCAGATTATACGCATCAGCTTCTGAGAGATACCCGCGCTGAAAGAGG
ACACAAGAAAAACTGTTCTGTGAAAACAGCCAGCAGGCAAACAAGCCTGCATTTAGGATC
CTTGTGCACGGGAGATATCAAACGGAGAAGAAAGGCTGCACCTCTGCCTGGACCTACCAT
CGCAGGTAAAAGGAAGGGGCTGGGGGCAGAACACACATGCCAAGTTCATAAATCCTCGAG
AGTAAACTCGAGATAAGCCTTCATCACTTGTCCAGAGGAAGAGCCATGATTCTAAGAAAC
TGGAAAATCGGATCTTTTGTCTTCGGTGTCAGAGTGTGTTGTACGTTCCTGGGGTGGGTT
TTCCAGGCAGCTGACCACGAAAGTATTTCTTCCACTCCTGCCCAAATTCGAGATTCCCTC
TGAGGTATGGAGGGATACCGAAATGTCAAAAGCTGTGTCTTTGGCCTCAAGAAAGTTTCA
GACTTGTTGGGAAAACGACGCATAAACAGATGAAAAGGCAGGTAACCCCAGAAGCAATTA
GCAGTAATGAATTCACAAGTACGGTAGCAGCCTCAGAACATAGGGCCCGTGAGGCAGTGG
ACGGCAGCCTGGCTGTGGGTGCGGCTGGCTGGTCTCTAGACCCAGCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTCATGTCTTTACAAATGTAATACAGTATCATGTTAGCCTGTTTAGTATCAGTAGAAC
CGCATTCGTACTTTCAAATGATGTTTCCTCACCTAGCGAATAAATAATTAACTGAAGAAT
TCTAATCATGTGAATTATAAGGAAGAATATCACCGTTTCCCTCCATCTGTTTAAAATGTT
TGAAGAGAATTTGCTGCCGCCTGATATCCTAAAAGAAATTGATCATACTTTTCCTGTAAT
AAATGTTGTTCTGACAGTAAAGCATTAGTAACCAATTGATAACCTAGCAACAATATTGTG
ATCTCTTTAGATAATTAATCTTAGCTATTTTCCTGTCAGAAGCAACAGTGCTCGATTTTA
TGTTGAGCCAGAAAGATTGCCAGTTTTGAAAATTAAAAAGCATTCCTTTTATATTATTCA
TTCCAGTAACAATTTATGATGGCGCATTTAGCGGCTGAACGCTTGTCAACAAACGTAATT
ATGTTTCGATATAAACAAGATTGGTGGTTTGACTGTGCTGCTCCATCTTTGTTGAGAATG
TTTTGATTTAGGTTCAGATTATACGCATCAGCTTCTGAGAGATACCCGCGCTGAAAGAGG
ACACAAGAAAAACTGTTCTGTGAAAACAGCCAGCAGGCAAACAAGCCTGCATTTAGGATC
CTTGTGCACGGGAGATATCAAACGGAGAAGAAAGGCTGCACCTCTGCCTGGACCTACCAT
CGCAGGTAAAAGGAAGGGGCTGGGGGCAGAACACACATGCCAAGTTCATAAATCCTCGAG
AGTAAACTCGAGATAAGCCTTCATCACTTGTCCAGAGGAAGAGCCATGATTCTAAGAAAC
TGGAAAATCGGATCTTTTGTCTTCGGTGTCAGAGTGTGTTGTACGTTCCTGGGGTGGGTT
TTCCAGGCAGCTGACCACGAAAGTATTTCTTCCACTCCTGCCCAAATTCGAGATTCCCTC
TGAGGTATGGAGGGATACCGAAATGTCAAAAGCTGTGTCTTTGGCCTCAAGAAAGTTTCA
GACTTGTTGGGAAAACGACGCATAAACAGATGAAAAGGCAGGTAACCCCAGAAGCAATTA
GCAGTAATGAATTCACAAGTACGGTAGCAGCCTCAGAACATAGGGCCCGTGAGGCAGTGG
ACGGCAGCCTGGCTGTGGGTGCGGCTGGCTGGTCTCTAGACCCAGCTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               242-361, - strand, RNAz p=0.948945

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               242-361, - strand, RNAz p=0.948945

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               4-925, gnl|bosTau2|chr16 (8968950-8968040)
               

               
               4-925, gnl|Hg17|chr1 (214011695-214010802)
               

               
               4-925, gnl|Mm7|chr1 (186866272-186867162)
               


               
               960-1188, gnl|bosTau2|chr16 (8967569-8967346)
               

               
               960-1188, gnl|Hg17|chr1 (214010758-214010526)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-925, gnl|bosTau2|chr16 (8968950-8968040)
               

               
               4-925, gnl|Hg17|chr1 (214011695-214010802)
               

               
               4-925, gnl|Mm7|chr1 (186866272-186867162)
               


               
               960-1188, gnl|bosTau2|chr16 (8967569-8967346)
               

               
               960-1188, gnl|Hg17|chr1 (214010758-214010526)

	4-925, gnl\|bosTau2\|chr16 (8968950-8968040)
	4-925, gnl\|Hg17\|chr1 (214011695-214010802)
	4-925, gnl\|Mm7\|chr1 (186866272-186867162)

	960-1188, gnl\|bosTau2\|chr16 (8967569-8967346)
	960-1188, gnl\|Hg17\|chr1 (214010758-214010526)