Non-Coding RNA Search

Ss1.1-Lng1-LNG010077A02.5

Sequence:


               
               AGGCGGGAGCCGTAGAGCTGAGGAGGTCCCCGGGCTGCAGACGGCAACCGGCAGGGAACC
ATGACTGCTGTGGGCCGAAGGTGCCCTGCACTGGGACCCAGAGGGGCCACCGGAGAGCCG
GAAGCTGGCGGGGACTATGTGAAGTTCTCCAAGGAGAAGTACATCCTGGACTCCTCGCCT
GAGAAATTGCACAAGGAGCTGGAGGAAGAGCTCAAACTCAGCAGCACGGATCTCCGCAGC
CATGCCTGGTACCATGGCCGCATCCCCCGGGAGGTCTCGGAGACCCTGGTGCAGCGCAAC
GGCGACTTCCTCATCCGGGACTCGCTCACCAGCCTGGGTGACTACGTGCTCACATGCCGC
TGGCGCAACCAGGCCTTGCACTTCAAGATCAACAAGGTGGTGGTGAAGGCGGGCGAGAGC
TACACCCACATCCAGTACCTGTTCGAGCAGGAGAGCTTTGACCACGTGCCCGCCCTTGTG
AGGTACCACGTGGGCAGCCGCAAGGCTGTGTCCGAGCAGAGCGGCGCCATCATCTACTGC
CCGGTCAACCGCACCTTCCCGCTGCGCTACCTGGAGGCCTGCTACGGCCTGGGCCAGGGC
AGTGGCAAGGCTGCCAGCCCCGCCAGCCCCTCGGGCCCCAAGGGCAGTCACATGAAGCGG
CGCAGCGTCACCATGACCGACGGGCTCACTGCCGACAAGGTCACCCGCAGTGACGGCTGC
CCCAACAGCACATCACTGCCCCACCCTCGGGAATCCATCCGCAACTGTGCACTCAGCATG
GACCAGATCCCAGACCTGCACTCGCCCATGTCCCCCATCTCCGAGAGCCCCAGCTCCCCC
GCCTACAGTACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGCGGGAGCCGTAGAGCTGAGGAGGTCCCCGGGCTGCAGACGGCAACCGGCAGGGAACC
ATGACTGCTGTGGGCCGAAGGTGCCCTGCACTGGGACCCAGAGGGGCCACCGGAGAGCCG
GAAGCTGGCGGGGACTATGTGAAGTTCTCCAAGGAGAAGTACATCCTGGACTCCTCGCCT
GAGAAATTGCACAAGGAGCTGGAGGAAGAGCTCAAACTCAGCAGCACGGATCTCCGCAGC
CATGCCTGGTACCATGGCCGCATCCCCCGGGAGGTCTCGGAGACCCTGGTGCAGCGCAAC
GGCGACTTCCTCATCCGGGACTCGCTCACCAGCCTGGGTGACTACGTGCTCACATGCCGC
TGGCGCAACCAGGCCTTGCACTTCAAGATCAACAAGGTGGTGGTGAAGGCGGGCGAGAGC
TACACCCACATCCAGTACCTGTTCGAGCAGGAGAGCTTTGACCACGTGCCCGCCCTTGTG
AGGTACCACGTGGGCAGCCGCAAGGCTGTGTCCGAGCAGAGCGGCGCCATCATCTACTGC
CCGGTCAACCGCACCTTCCCGCTGCGCTACCTGGAGGCCTGCTACGGCCTGGGCCAGGGC
AGTGGCAAGGCTGCCAGCCCCGCCAGCCCCTCGGGCCCCAAGGGCAGTCACATGAAGCGG
CGCAGCGTCACCATGACCGACGGGCTCACTGCCGACAAGGTCACCCGCAGTGACGGCTGC
CCCAACAGCACATCACTGCCCCACCCTCGGGAATCCATCCGCAACTGTGCACTCAGCATG
GACCAGATCCCAGACCTGCACTCGCCCATGTCCCCCATCTCCGAGAGCCCCAGCTCCCCC
GCCTACAGTACT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q5JU32_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5JU32_HUMAN

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               1-95, + strand, RNAz p=0.686145
               

               
               391-670, - strand, RNAz p=0.918559

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-95, + strand, RNAz p=0.686145
               

               
               391-670, - strand, RNAz p=0.918559

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-105, gnl|bosTau2|chr11 (77301066-77300964)
               

               
               1-105, gnl|canFam2|chr9 (58975297-58975033)
               

               
               1-105, gnl|echTel1|scaffold_296194 (8184-7919)
               

               
               1-105, gnl|hg17|chr9 (127612931-127613207)
               

               
               1-105, gnl|Hg17|chr9 (127613122-127613018)
               

               
               1-105, gnl|loxAfr1|scaffold_39070 (8818-9086)
               

               
               1-105, gnl|mm7|chr2 (32735207-32734939)
               

               
               1-105, gnl|Mm7|chr2 (32735024-32735118)
               

               
               1-105, gnl|monDom2|scaffold_51 (2160198-2160533)
               

               
               1-105, gnl|panTro1|chr11 (112430201-112430478)
               

               
               1-105, gnl|rn3|chr3 (11598986-11598710)
               


               
               272-728, gnl|bosTau2|chr11 (79626362-79625906)
               

               
               272-728, gnl|Hg17|chr9 (127591500-127591044)
               

               
               272-728, gnl|Mm7|chr2 (32753144-32753600)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-105, gnl|bosTau2|chr11 (77301066-77300964)
               

               
               1-105, gnl|canFam2|chr9 (58975297-58975033)
               

               
               1-105, gnl|echTel1|scaffold_296194 (8184-7919)
               

               
               1-105, gnl|hg17|chr9 (127612931-127613207)
               

               
               1-105, gnl|Hg17|chr9 (127613122-127613018)
               

               
               1-105, gnl|loxAfr1|scaffold_39070 (8818-9086)
               

               
               1-105, gnl|mm7|chr2 (32735207-32734939)
               

               
               1-105, gnl|Mm7|chr2 (32735024-32735118)
               

               
               1-105, gnl|monDom2|scaffold_51 (2160198-2160533)
               

               
               1-105, gnl|panTro1|chr11 (112430201-112430478)
               

               
               1-105, gnl|rn3|chr3 (11598986-11598710)
               


               
               272-728, gnl|bosTau2|chr11 (79626362-79625906)
               

               
               272-728, gnl|Hg17|chr9 (127591500-127591044)
               

               
               272-728, gnl|Mm7|chr2 (32753144-32753600)

	1-95, + strand, RNAz p=0.686145
	391-670, - strand, RNAz p=0.918559

	1-105, gnl\|bosTau2\|chr11 (77301066-77300964)
	1-105, gnl\|canFam2\|chr9 (58975297-58975033)
	1-105, gnl\|echTel1\|scaffold_296194 (8184-7919)
	1-105, gnl\|hg17\|chr9 (127612931-127613207)
	1-105, gnl\|Hg17\|chr9 (127613122-127613018)
	1-105, gnl\|loxAfr1\|scaffold_39070 (8818-9086)
	1-105, gnl\|mm7\|chr2 (32735207-32734939)
	1-105, gnl\|Mm7\|chr2 (32735024-32735118)
	1-105, gnl\|monDom2\|scaffold_51 (2160198-2160533)
	1-105, gnl\|panTro1\|chr11 (112430201-112430478)
	1-105, gnl\|rn3\|chr3 (11598986-11598710)

	272-728, gnl\|bosTau2\|chr11 (79626362-79625906)
	272-728, gnl\|Hg17\|chr9 (127591500-127591044)
	272-728, gnl\|Mm7\|chr2 (32753144-32753600)