Non-Coding RNA Search

Ss1.1-Lng1-LNG010078E12.5

Sequence:


               
               GTTCCCGTCGTGGCGCAGTGGTTAACGAATCCGACTAGGAACCATGAGGTTGTGGGTTCG
GTCCCTGGCCTTGCTCAGTGGGTTAACGATCCGGCATTGCCGTGAGCTGTGATGTAGGTT
GCAGACGTGGCTTGGATCCCGCGTTGCTGTGGCTGTGGTGTAGGTCGGCAGCTACAGCTC
CAATTGGACCCCTAACCTGGGAACCTCCATATGCCACTGGAGCGGCCCAAGAAATGGCAA
AAAGACAAAAAATAATAATAATAATAAAAATAAAATAAAATAAAATTCAGCAAAGTAATT
CAGCAGTTACTAAGCACCTACTATGTACCAGTTACTGCTTTAGGCACTAGGGACACTGCT
GTGAATAAAACAGGCAGAAACCCTTGCCCTCATGGAGCTTGTTTTCTAGGAGCAAAGGTG
ACCTGTCCACAGTCCTGCCTGTGGTTGAGATGCAGAGCCACCTGGCACTCAGGTGCCTTT
GCATCTCTGCTTAGGAGCTTGGTTCACTTGGTTAGAAGCAGAGAGCTCTTAGGCATTGCT
ACTGGTGTCTTATCACAAAGTCATGATGTTCATTGTATCAGAGCATAACAAGGATAAGCC
ATGAGATGCTGGCCAAGAACTTTTACATCTTGGAAATTAAAATATTAGATCAATCTTTGG
CTTTGCTATCTCAACTTAATCTTCTGAACCAACAGAAAATATCACAACCACTATAAAAAA
TGTTGCAGGGAGTTCCCGTTGTGGCGCAGTGGTTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCCCGTCGTGGCGCAGTGGTTAACGAATCCGACTAGGAACCATGAGGTTGTGGGTTCG
GTCCCTGGCCTTGCTCAGTGGGTTAACGATCCGGCATTGCCGTGAGCTGTGATGTAGGTT
GCAGACGTGGCTTGGATCCCGCGTTGCTGTGGCTGTGGTGTAGGTCGGCAGCTACAGCTC
CAATTGGACCCCTAACCTGGGAACCTCCATATGCCACTGGAGCGGCCCAAGAAATGGCAA
AAAGACAAAAAATAATAATAATAATAAAAATAAAATAAAATAAAATTCAGCAAAGTAATT
CAGCAGTTACTAAGCACCTACTATGTACCAGTTACTGCTTTAGGCACTAGGGACACTGCT
GTGAATAAAACAGGCAGAAACCCTTGCCCTCATGGAGCTTGTTTTCTAGGAGCAAAGGTG
ACCTGTCCACAGTCCTGCCTGTGGTTGAGATGCAGAGCCACCTGGCACTCAGGTGCCTTT
GCATCTCTGCTTAGGAGCTTGGTTCACTTGGTTAGAAGCAGAGAGCTCTTAGGCATTGCT
ACTGGTGTCTTATCACAAAGTCATGATGTTCATTGTATCAGAGCATAACAAGGATAAGCC
ATGAGATGCTGGCCAAGAACTTTTACATCTTGGAAATTAAAATATTAGATCAATCTTTGG
CTTTGCTATCTCAACTTAATCTTCTGAACCAACAGAAAATATCACAACCACTATAAAAAA
TGTTGCAGGGAGTTCCCGTTGTGGCGCAGTGGTTAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               399-540, + strand, RNAz p=0.995402

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               399-540, + strand, RNAz p=0.995402

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               280-719, gnl|bosTau2|chr19 (28097213-28097655)
               

               
               280-719, gnl|Hg17|chr5 (34918357-34917640)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               280-719, gnl|bosTau2|chr19 (28097213-28097655)
               

               
               280-719, gnl|Hg17|chr5 (34918357-34917640)

	280-719, gnl\|bosTau2\|chr19 (28097213-28097655)
	280-719, gnl\|Hg17\|chr5 (34918357-34917640)