Non-Coding RNA Search

Ss1.1-Lng1-LNG010079A01.5

Sequence:


               
               GCTTACTGAGGCCTGAGAAGATCACCAGGCTCCTCCTCACTTATTCGTTATTGCCTTTGT
CAAAGAGAAAGAGTGCTGTTCATTAGTGTCTGTCCTAGTGTGATAAATCTTTATTTTCTT
GTAGAATTAATATGGTGCCACGGAGATTACATGAAATTTTGATTCTCAAAAGGGGCGATA
ATGGCAGTTTGAATGGGATAACTCTTCATTGCAGAAGATCTGCCTTGCAGGATGTTGAGC
ATCCCTGCACCCAACTCCCAGTAGTACTTCCAGCGATTGCCACACCCAGCTCCCTACAAC
ACACTTGCCAACAGTCCCATGCATATTTTTGCTGAAAGCCAAAGAACTGTGGCCTCTAAC
AAAGTATGTGACTCTTTTTCTACCCCTGACAGTATTATGCCTACCTGTATTCTTACGTGA
TGCCCCAGGCCATCCGAGATATGGTGGATGAATACATCAACTGTGAGGACATTGCCATGA
ATTTCCTCGTCTCCCACATCACTCGGAAACCCCCCATCAAGGTGAGGCTCCCAATGCTTA
TAGGACCGAAGTTGCATGCATACTTTATTCACTCATTCTGAAGTAGTGCAGTACGTAACT
CTCCAGATCTCAGAGTCCTTATCTGTGAGTGGGGGTCATGACACCACCAACGAAATAGAA
TCATCTTAGGGTTAAATGAGCTGTTAATACAGGGGCTCTTTACTCCTAAAATGTAAATGG
GTAGAATTCAGAGAGTTTGGAACTTGAATGGGAAAAAATAATACATCTTTAATTTTCACA
AATCATGAATTTGAATTTAGCGTTTTTATCAGTTATGAAGCAGGCTGTAATTCATAAGTA
ACTGTGATTTGTTACTACTAGAACTCACACGTTTTTCATGTCACATTAACTTGTTGCCAC
ATCTTGAGGTATTGTTTATGTTTATTACCTGCTTTGAAATTACAGTGGTTGTTAACTTTC
TCCTAGACCTTGTTACTTAGGATAAAATAGTAAAGGGGCACATATATTACTGTATTTCAG
TATAATGTATTTCCCTTTATAATCTCAAGTGTTTGTTTTATGTATTTA------------
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AACAATAACAACAACAACAACAACAAAAAAGACAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTTACTGAGGCCTGAGAAGATCACCAGGCTCCTCCTCACTTATTCGTTATTGCCTTTGT
CAAAGAGAAAGAGTGCTGTTCATTAGTGTCTGTCCTAGTGTGATAAATCTTTATTTTCTT
GTAGAATTAATATGGTGCCACGGAGATTACATGAAATTTTGATTCTCAAAAGGGGCGATA
ATGGCAGTTTGAATGGGATAACTCTTCATTGCAGAAGATCTGCCTTGCAGGATGTTGAGC
ATCCCTGCACCCAACTCCCAGTAGTACTTCCAGCGATTGCCACACCCAGCTCCCTACAAC
ACACTTGCCAACAGTCCCATGCATATTTTTGCTGAAAGCCAAAGAACTGTGGCCTCTAAC
AAAGTATGTGACTCTTTTTCTACCCCTGACAGTATTATGCCTACCTGTATTCTTACGTGA
TGCCCCAGGCCATCCGAGATATGGTGGATGAATACATCAACTGTGAGGACATTGCCATGA
ATTTCCTCGTCTCCCACATCACTCGGAAACCCCCCATCAAGGTGAGGCTCCCAATGCTTA
TAGGACCGAAGTTGCATGCATACTTTATTCACTCATTCTGAAGTAGTGCAGTACGTAACT
CTCCAGATCTCAGAGTCCTTATCTGTGAGTGGGGGTCATGACACCACCAACGAAATAGAA
TCATCTTAGGGTTAAATGAGCTGTTAATACAGGGGCTCTTTACTCCTAAAATGTAAATGG
GTAGAATTCAGAGAGTTTGGAACTTGAATGGGAAAAAATAATACATCTTTAATTTTCACA
AATCATGAATTTGAATTTAGCGTTTTTATCAGTTATGAAGCAGGCTGTAATTCATAAGTA
ACTGTGATTTGTTACTACTAGAACTCACACGTTTTTCATGTCACATTAACTTGTTGCCAC
ATCTTGAGGTATTGTTTATGTTTATTACCTGCTTTGAAATTACAGTGGTTGTTAACTTTC
TCCTAGACCTTGTTACTTAGGATAAAATAGTAAAGGGGCACATATATTACTGTATTTCAG
TATAATGTATTTCCCTTTATAATCTCAAGTGTTTGTTTTATGTATTTA------------
------------------------------------------------------------
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AACAATAACAACAACAACAACAACAAAAAAGACAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               413-532, - strand, RNAz p=0.540159

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               413-532, - strand, RNAz p=0.540159

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-976, gnl|bosTau2|chr8 (4814449-4813493)
               

               
               2-976, gnl|Hg17|chr8 (28656121-28657123)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-976, gnl|bosTau2|chr8 (4814449-4813493)
               

               
               2-976, gnl|Hg17|chr8 (28656121-28657123)

	2-976, gnl\|bosTau2\|chr8 (4814449-4813493)
	2-976, gnl\|Hg17\|chr8 (28656121-28657123)