Ss1.1-Lng1-LNG010080A10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGGCGGACGCAGCCTTCTCCCGCGGCGACACGCGCCTAACTGGGCTCAGGCCGCCGCTC GGTGCGTTCCTGCGCTAATGCCATCTTGCCAGAGGCTGTCACGTGCGGACGACAGCATCG CGCTTCGCCCCGGCCCGAACGCCAAAACCGACATCGGGACGCCACCTGGTTCCCGGGGTT CCATCCAACCCGAGCACTTTCATTTGGACCTTGGATGCCCATTGAACAGATGCCTGAGAA CTGCAAGTAATCTTCAGATTGTAGCAGAACCATAAGGCCTGTGCTCTTTGTGGGGAAGAA ATCGCCCATGTGCTGTGGAAATGAACGGGGAGCAGCAGATTGATGCAGATGCTGGATCTA GTGTGGAAGAAGTGGAATTAAGCTGGGAAGATTATCTAGAAGAGACAGGCTCCACAGCAG TGCCCTATGGGTCTTTTAAACATGTGGACACACGTTTGCAAAATGGATTTGCTCCTGGGA TGAAACTGGAAGTGGTTGTAAAGACAAATCCTGAAGCCTACTGGGTTGCCACCATCATTA CCACCTGTGAGCAGTTGCTCCTCCTCCGCTACGATGGCTATGGGGAAGACCGGAGAGCCG ACTTTTGGTGTGACATCAGGAAGGCTGACCTCTACCCCATTGGGTGGTGTGAGCAGAATA AGAAGACCCTTGAAGCTCCCGAAGGCATCAGAGATAAAGTGTCTGATTGGAATGAGTTTC TGCGGCAAACCCTGATGGGAGCATGTAGTCCTCCTGTTCCGCTGCTAGAGGGCCTCCGTA ATGGGAGGAATCCTTTAGATCTCATTGCTCCAGGGTTCAGGCTGGAATGTCAAGCTTTCC AGGACTCTTTAAGCACTTGGATTGTTACTGTAGTAGACAATATTGGGGGAAGGCTGAAGC TGCGTTATGAAGGACTTGAGAGTTCTGATAATTTTGAACTTTGGTTGTATTACTTGGATC CATTTCTTCATCACGTTGGTTGGGCTGCTCAACAGGGATATGAGCTTCAGCCCCCATTAG CCATCAAACATCTGAAAAATGAAGATGAGTGGCAAGAGATCTTGACCAAAGTAAAAGAGG AAGAGGAAGAGCCATTACCATCTTACTTATTTAAGGACAAACCAGTGATTGGGATGCATT CATTCTCTGTAAATATGAAATTGGAAGCAGTGGACCCCTGGTCTCCTTTTGGAATCTGTC CTGCTACAGTTGTTAAGGTTTTTGATGAAGAAGTATTTTCTGGTGGAAATGGATGATNTG CGACCAGAGAATCATGCACAGAGATCCTTCGTGTGTCATGCCAATAGTCCTGGTATTTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGGCGGACGCAGCCTTCTCCCGCGGCGACACGCGCCTAACTGGGCTCAGGCCGCCGCTC GGTGCGTTCCTGCGCTAATGCCATCTTGCCAGAGGCTGTCACGTGCGGACGACAGCATCG CGCTTCGCCCCGGCCCGAACGCCAAAACCGACATCGGGACGCCACCTGGTTCCCGGGGTT CCATCCAACCCGAGCACTTTCATTTGGACCTTGGATGCCCATTGAACAGATGCCTGAGAA CTGCAAGTAATCTTCAGATTGTAGCAGAACCATAAGGCCTGTGCTCTTTGTGGGGAAGAA ATCGCCCATGTGCTGTGGAAATGAACGGGGAGCAGCAGATTGATGCAGATGCTGGATCTA GTGTGGAAGAAGTGGAATTAAGCTGGGAAGATTATCTAGAAGAGACAGGCTCCACAGCAG TGCCCTATGGGTCTTTTAAACATGTGGACACACGTTTGCAAAATGGATTTGCTCCTGGGA TGAAACTGGAAGTGGTTGTAAAGACAAATCCTGAAGCCTACTGGGTTGCCACCATCATTA CCACCTGTGAGCAGTTGCTCCTCCTCCGCTACGATGGCTATGGGGAAGACCGGAGAGCCG ACTTTTGGTGTGACATCAGGAAGGCTGACCTCTACCCCATTGGGTGGTGTGAGCAGAATA AGAAGACCCTTGAAGCTCCCGAAGGCATCAGAGATAAAGTGTCTGATTGGAATGAGTTTC TGCGGCAAACCCTGATGGGAGCATGTAGTCCTCCTGTTCCGCTGCTAGAGGGCCTCCGTA ATGGGAGGAATCCTTTAGATCTCATTGCTCCAGGGTTCAGGCTGGAATGTCAAGCTTTCC AGGACTCTTTAAGCACTTGGATTGTTACTGTAGTAGACAATATTGGGGGAAGGCTGAAGC TGCGTTATGAAGGACTTGAGAGTTCTGATAATTTTGAACTTTGGTTGTATTACTTGGATC CATTTCTTCATCACGTTGGTTGGGCTGCTCAACAGGGATATGAGCTTCAGCCCCCATTAG CCATCAAACATCTGAAAAATGAAGATGAGTGGCAAGAGATCTTGACCAAAGTAAAAGAGG AAGAGGAAGAGCCATTACCATCTTACTTATTTAAGGACAAACCAGTGATTGGGATGCATT CATTCTCTGTAAATATGAAATTGGAAGCAGTGGACCCCTGGTCTCCTTTTGGAATCTGTC CTGCTACAGTTGTTAAGGTTTTTGATGAAGAAGTATTTTCTGGTGGAAATGGATGATNTG CGACCAGAGAATCATGCACAGAGATCCTTCGTGTGTCATGCCAATAGTCCTGGTATTTTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 893-1012, + strand, RNAz p=0.514169 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 893-1012, + strand, RNAz p=0.514169 |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 193-348, gnl|bosTau2|chr22 (37221593-37221437) | |
| 193-348, gnl|canFam2|chr20 (39917428-39917252) | |
| 193-348, gnl|dasNov1|scaffold_157486 (2660-2475) | |
| 193-348, gnl|echTel1|scaffold_21123 (3002-2838) | |
| 193-348, gnl|galGal2|chr12 (811074-811261) | |
| 193-348, gnl|hg17|chr3 (52978147-52978336) | |
| 193-348, gnl|Hg17|chr3 (52978316-52978157) | |
| 193-348, gnl|mm7|chr14 (28195718-28195529) | |
| 193-348, gnl|Mm7|chr14 (28195553-28195706) | |
| 193-348, gnl|oryCun1|scaffold_110681 (4558-4749) | |
| 193-348, gnl|panTro1|chr2 (54626783-54626968) | |
| 193-348, gnl|rheMac2|chr2 (83377710-83377525) | |
| 193-348, gnl|rn3|chr16 (6185642-6185458) | |
| 441-696, gnl|bosTau2|chr22 (37206584-37206329) | |
| 441-696, gnl|canFam2|chr20 (39930647-39930379) | |
| 441-696, gnl|danRer3|chr11 (17835580-17835849) | |
| 441-696, gnl|dasNov1|scaffold_42644 (751-483) | |
| 441-696, gnl|echTel1|scaffold_305292 (129788-129539) | |
| 441-696, gnl|fr1|chrUn (208997464-208997724) | |
| 441-696, gnl|galGal2|chr12 (800930-801190) | |
| 441-696, gnl|hg17|chr3 (52952396-52952664) | |
| 441-696, gnl|Hg17|chr3 (52952652-52952398) | |
| 441-696, gnl|loxAfr1|scaffold_50918 (12528-12796) | |
| 441-696, gnl|mm7|chr14 (28203753-28203478) | |
| 441-696, gnl|Mm7|chr14 (28203487-28203735) | |
| 441-696, gnl|monDom2|scaffold_5 (69793074-69792807) | |
| 441-696, gnl|oryCun1|scaffold_178007 (58604-58343) | |
| 441-696, gnl|panTro1|chr2 (54597067-54597335) | |
| 441-696, gnl|rheMac2|chr2 (83406958-83406690) | |
| 441-696, gnl|rn3|chr16 (6194346-6194091) | |
| 441-696, gnl|tetNig1|chr11 (1162443-1162695) | |
| 441-696, gnl|xenTro1|scaffold_425 (824051-823795) | |
| 774-1020, gnl|bosTau2|chr22 (37198000-37197754) | |
| 774-1020, gnl|Hg17|chr3 (52941364-52941118) | |
| 774-1020, gnl|Mm7|chr14 (28213548-28213794) | |
| 1109-1219, gnl|bosTau2|chr22 (37196081-37195971) | |
| 1109-1219, gnl|canFam2|chr20 (39942203-39942127) | |
| 1109-1219, gnl|danRer3|chr11 (17824528-17824595) | |
| 1109-1219, gnl|dasNov1|scaffold_13132 (39976-39900) | |
| 1109-1219, gnl|echTel1|scaffold_237019 (3219-3295) | |
| 1109-1219, gnl|fr1|chrUn (208994326-208994398) | |
| 1109-1219, gnl|galGal2|chr12 (796850-796923) | |
| 1109-1219, gnl|hg17|chr3 (52939374-52939450) | |
| 1109-1219, gnl|Hg17|chr3 (52939493-52939383) | |
| 1109-1219, gnl|loxAfr1|scaffold_145744 (4926-4999) | |
| 1109-1219, gnl|mm7|chr14 (28215533-28215457) | |
| 1109-1219, gnl|Mm7|chr14 (28215412-28215522) | |
| 1109-1219, gnl|monDom2|scaffold_5 (69800302-69800231) | |
| 1109-1219, gnl|panTro1|chr2 (54584007-54584083) | |
| 1109-1219, gnl|rheMac2|chr2 (83416354-83416278) | |
| 1109-1219, gnl|rn3|chr16 (6205201-6205125) | |
| 1109-1219, gnl|tetNig1|chr11 (1159611-1159677) | |
| 1109-1219, gnl|xenTro1|scaffold_425 (833990-833923) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 193-348, gnl|bosTau2|chr22 (37221593-37221437) | |
| 193-348, gnl|canFam2|chr20 (39917428-39917252) | |
| 193-348, gnl|dasNov1|scaffold_157486 (2660-2475) | |
| 193-348, gnl|echTel1|scaffold_21123 (3002-2838) | |
| 193-348, gnl|galGal2|chr12 (811074-811261) | |
| 193-348, gnl|hg17|chr3 (52978147-52978336) | |
| 193-348, gnl|Hg17|chr3 (52978316-52978157) | |
| 193-348, gnl|mm7|chr14 (28195718-28195529) | |
| 193-348, gnl|Mm7|chr14 (28195553-28195706) | |
| 193-348, gnl|oryCun1|scaffold_110681 (4558-4749) | |
| 193-348, gnl|panTro1|chr2 (54626783-54626968) | |
| 193-348, gnl|rheMac2|chr2 (83377710-83377525) | |
| 193-348, gnl|rn3|chr16 (6185642-6185458) | |
| 441-696, gnl|bosTau2|chr22 (37206584-37206329) | |
| 441-696, gnl|canFam2|chr20 (39930647-39930379) | |
| 441-696, gnl|danRer3|chr11 (17835580-17835849) | |
| 441-696, gnl|dasNov1|scaffold_42644 (751-483) | |
| 441-696, gnl|echTel1|scaffold_305292 (129788-129539) | |
| 441-696, gnl|fr1|chrUn (208997464-208997724) | |
| 441-696, gnl|galGal2|chr12 (800930-801190) | |
| 441-696, gnl|hg17|chr3 (52952396-52952664) | |
| 441-696, gnl|Hg17|chr3 (52952652-52952398) | |
| 441-696, gnl|loxAfr1|scaffold_50918 (12528-12796) | |
| 441-696, gnl|mm7|chr14 (28203753-28203478) | |
| 441-696, gnl|Mm7|chr14 (28203487-28203735) | |
| 441-696, gnl|monDom2|scaffold_5 (69793074-69792807) | |
| 441-696, gnl|oryCun1|scaffold_178007 (58604-58343) | |
| 441-696, gnl|panTro1|chr2 (54597067-54597335) | |
| 441-696, gnl|rheMac2|chr2 (83406958-83406690) | |
| 441-696, gnl|rn3|chr16 (6194346-6194091) | |
| 441-696, gnl|tetNig1|chr11 (1162443-1162695) | |
| 441-696, gnl|xenTro1|scaffold_425 (824051-823795) | |
| 774-1020, gnl|bosTau2|chr22 (37198000-37197754) | |
| 774-1020, gnl|Hg17|chr3 (52941364-52941118) | |
| 774-1020, gnl|Mm7|chr14 (28213548-28213794) | |
| 1109-1219, gnl|bosTau2|chr22 (37196081-37195971) | |
| 1109-1219, gnl|canFam2|chr20 (39942203-39942127) | |
| 1109-1219, gnl|danRer3|chr11 (17824528-17824595) | |
| 1109-1219, gnl|dasNov1|scaffold_13132 (39976-39900) | |
| 1109-1219, gnl|echTel1|scaffold_237019 (3219-3295) | |
| 1109-1219, gnl|fr1|chrUn (208994326-208994398) | |
| 1109-1219, gnl|galGal2|chr12 (796850-796923) | |
| 1109-1219, gnl|hg17|chr3 (52939374-52939450) | |
| 1109-1219, gnl|Hg17|chr3 (52939493-52939383) | |
| 1109-1219, gnl|loxAfr1|scaffold_145744 (4926-4999) | |
| 1109-1219, gnl|mm7|chr14 (28215533-28215457) | |
| 1109-1219, gnl|Mm7|chr14 (28215412-28215522) | |
| 1109-1219, gnl|monDom2|scaffold_5 (69800302-69800231) | |
| 1109-1219, gnl|panTro1|chr2 (54584007-54584083) | |
| 1109-1219, gnl|rheMac2|chr2 (83416354-83416278) | |
| 1109-1219, gnl|rn3|chr16 (6205201-6205125) | |
| 1109-1219, gnl|tetNig1|chr11 (1159611-1159677) | |
| 1109-1219, gnl|xenTro1|scaffold_425 (833990-833923) |