Non-Coding RNA Search

Ss1.1-Lng1-LNG010080B10.5

Sequence:


               
               TCTCGTGACACACCTGCTGAAATTTTGTTGTGTTGTCTACAATTTAAAGGGAACCCCTGG
GTAGAAATTGAAAATCATCTGTTTTGTGGGCCTGTTTTTTCTTTTTCTTTTCTTTTTTTT
TTTTTAATTGGCTATTCTGATCATGTTGGTTGTAAAGGAAATAGAGGTGCATGATGGTAC
TGATGGGGGCGGGGTCAGTTTTCTTTTGTTTCTATTGGCGTCTCTAAGGATTGAGACCTG
ACCTGAGTCTTGCCTCTCGCGCACCACCTATCATGGATGGAAGTGTGACCAGAAATGGAT
ATCTCAGCTAATTTTTATTAGCCCCTGTCTGTTCACCAAACCCTCTTATAATATTGAGCA
AAAAAATCTGGCAAATTGGACTTGAGGGGTGGTAATTTGATGATGGGCTGAGTTATTTTG
GTGAAAGATCATTTATGCTCAGTTTCACAGAGGAGACTCTTATTACTTAATGTTTTGCTT
TTCTGCCTAAGGAGTTTTTTTTTTTTTTTTTTTTTCTAATTAGGTTTGAAATTTCAAGGG
CTTGCTTTATAGCTTGACTTTGGACCAAGCTAAGAAAAAGGGTTTGCTTATACTTTCAGC
CCCGCAAAGAGGTGAACTTGAACAAGGGCTCTTGTTTTTGCAGAAGGAAAGCAACAAAGA
TGGCTGGTCAGTATAAGGGTGACCTCTCCCTGGTCCTCGAAAAGAAACAGCCAATGATTT
GTTTCGTTCAAGAAACAGAGTTTAAAAACTCCTCCATTGTCAGATACAGTTTTTTCCCCT
ACCTTTGACTCAGCTCTTGGCCTGCTGCTTCCTCTGACCTCAGAATCCTCCTGTCTTCTT
CTTGGTGGGGTGATAAGAACTTCCTTGTGTGTTTCACCGGCTGCATAAGCTGCGTTTTCA
TGGTCATGGTGAAATTTTGAAATTTTTCCATGTTCTTGTGATGTTTCATGTCAGTTGTGT
CTCCTCCCTGGTGATGGAAAGTGAAGTGGCTTTATGGGTACACAGGAACCCTAGCTCTCC
CAAGGTCTTACTGTATGACCTTGGACAAGCCACTTTTTCCTTTGGAGCCTCGGTTTTTGC
ATTTGTAAAATGAGAGCTTTGAATCAAAACAGGGATATTAAGGAATAATTCTCTCCTGTG
ATTCTGACTCCAGGTAGCTGCCTGGATCACTGGATTTGAGAAGGAGTCTGAGGTTACACG
TTGTGTTGTGTTGTCTACGATTTAAAGGGGACCCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTCGTGACACACCTGCTGAAATTTTGTTGTGTTGTCTACAATTTAAAGGGAACCCCTGG
GTAGAAATTGAAAATCATCTGTTTTGTGGGCCTGTTTTTTCTTTTTCTTTTCTTTTTTTT
TTTTTAATTGGCTATTCTGATCATGTTGGTTGTAAAGGAAATAGAGGTGCATGATGGTAC
TGATGGGGGCGGGGTCAGTTTTCTTTTGTTTCTATTGGCGTCTCTAAGGATTGAGACCTG
ACCTGAGTCTTGCCTCTCGCGCACCACCTATCATGGATGGAAGTGTGACCAGAAATGGAT
ATCTCAGCTAATTTTTATTAGCCCCTGTCTGTTCACCAAACCCTCTTATAATATTGAGCA
AAAAAATCTGGCAAATTGGACTTGAGGGGTGGTAATTTGATGATGGGCTGAGTTATTTTG
GTGAAAGATCATTTATGCTCAGTTTCACAGAGGAGACTCTTATTACTTAATGTTTTGCTT
TTCTGCCTAAGGAGTTTTTTTTTTTTTTTTTTTTTCTAATTAGGTTTGAAATTTCAAGGG
CTTGCTTTATAGCTTGACTTTGGACCAAGCTAAGAAAAAGGGTTTGCTTATACTTTCAGC
CCCGCAAAGAGGTGAACTTGAACAAGGGCTCTTGTTTTTGCAGAAGGAAAGCAACAAAGA
TGGCTGGTCAGTATAAGGGTGACCTCTCCCTGGTCCTCGAAAAGAAACAGCCAATGATTT
GTTTCGTTCAAGAAACAGAGTTTAAAAACTCCTCCATTGTCAGATACAGTTTTTTCCCCT
ACCTTTGACTCAGCTCTTGGCCTGCTGCTTCCTCTGACCTCAGAATCCTCCTGTCTTCTT
CTTGGTGGGGTGATAAGAACTTCCTTGTGTGTTTCACCGGCTGCATAAGCTGCGTTTTCA
TGGTCATGGTGAAATTTTGAAATTTTTCCATGTTCTTGTGATGTTTCATGTCAGTTGTGT
CTCCTCCCTGGTGATGGAAAGTGAAGTGGCTTTATGGGTACACAGGAACCCTAGCTCTCC
CAAGGTCTTACTGTATGACCTTGGACAAGCCACTTTTTCCTTTGGAGCCTCGGTTTTTGC
ATTTGTAAAATGAGAGCTTTGAATCAAAACAGGGATATTAAGGAATAATTCTCTCCTGTG
ATTCTGACTCCAGGTAGCTGCCTGGATCACTGGATTTGAGAAGGAGTCTGAGGTTACACG
TTGTGTTGTGTTGTCTACGATTTAAAGGGGACCCCT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               161-272, - strand, RNAz p=0.949384
               

               
               937-1093, + strand, RNAz p=0.985217

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               161-272, - strand, RNAz p=0.949384
               

               
               937-1093, + strand, RNAz p=0.985217

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               18-1198, gnl|bosTau2|chr8 (56438881-56437700)
               

               
               18-1198, gnl|Hg17|chr9 (113721153-113722325)
               

               
               18-1198, gnl|Mm7|chr4 (62402367-62403475)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-1198, gnl|bosTau2|chr8 (56438881-56437700)
               

               
               18-1198, gnl|Hg17|chr9 (113721153-113722325)
               

               
               18-1198, gnl|Mm7|chr4 (62402367-62403475)

	161-272, - strand, RNAz p=0.949384
	937-1093, + strand, RNAz p=0.985217

	18-1198, gnl\|bosTau2\|chr8 (56438881-56437700)
	18-1198, gnl\|Hg17\|chr9 (113721153-113722325)
	18-1198, gnl\|Mm7\|chr4 (62402367-62403475)