Non-Coding RNA Search

Ss1.1-Lng1-LNG010086B03.5

Sequence:


               
               TTTTGTTTATAGATGTATAAATAACTTAAGCTCGTAGCGACTCTTTGTAAGGAAGTAGAC
GTTGACTGAATCCATGGTGGAGTATTGTACAGGCAACATGGTTGTCATTGCCATTTCAGG
GCATCAGACTCTGATCATTTCTCACATGTGCTTTAGAGTCACCTGTATTTATCTCCCAGC
CTCTTACCCTTTCCTTTCCAGTTTATTCTCTTGAAGATATTATCCAGAGTTATCTGATCG
GGCACTCCCCTTCCCAGTGTGATTTAGTTCCACTCGGGTTCTTAGGACTTAATCCAGGCT
CTTTATTCCTCCCAGGCTGTGCCCCACCGCCTCCCAGCCCTGTCACTCAAACACACACGC
AGCTTTCCTGGTCATCCTGAAGATGCCGCACCCATTCTGTGCCCTAGGCGCTCTCCACTC
CCCAGAGTGTCTGGATACCTTAGTGAATCCTCATCCTTCTCCAAAATATAAATATTTCTT
TTCGAAGCCCATTCCATATTCTTATTTTATGCTGCTGTCACTTATAAGCCAAATAAACCC
GTTTCCTCTACTTGGCTTACATATCTCCCCTGAACATACTCAGGGCCCCCGAATGTGGCT
TTGGATTTTTTATGCAATTATGTGTGGACATGTCTGTCTCCTTGCAAAGGCTGTGAACTC
CCTGAAGTGCAGAGGTTTTCATTTTATCTTGATAGCATCAGCATCTAGTCATCTGGCAGG
TATTCAGTGCACATTTGAATGCATGAAAACAAAATCCAGGAATGCCTTTTAATTCTAAAG
AGGAAACTGATGAGTGAAACACAACTAATCAAGCTGTCTCATTATAGCCCCCTGAGAAAG
AAAAATGGTCCAAACCAGGCCTGCAGTAGAACTTTCTGCATGATGTAATTCTCAACCTTC
TTCTGGGAAGTAATTTGCATCCTTGATTAAATGCTTGAGCAATTCTCTGATACTTCTAAA
TGATTAAGAACTTCTGAGAAGTCAGAGTTGTTCAACCAACTGACTGACTAACCTAATAAT
CTTTGACCAGACTGTTTTTTCCTTACCAAATAAAACTTTGACACATGCTTATAAACAATT
TGTCTGGAAAGTTGTTCTTTCTGGTGGTGAGGACCTCTCCATGAGAACATGCCTCTCACA
AAGTATCTCCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTGTTTATAGATGTATAAATAACTTAAGCTCGTAGCGACTCTTTGTAAGGAAGTAGAC
GTTGACTGAATCCATGGTGGAGTATTGTACAGGCAACATGGTTGTCATTGCCATTTCAGG
GCATCAGACTCTGATCATTTCTCACATGTGCTTTAGAGTCACCTGTATTTATCTCCCAGC
CTCTTACCCTTTCCTTTCCAGTTTATTCTCTTGAAGATATTATCCAGAGTTATCTGATCG
GGCACTCCCCTTCCCAGTGTGATTTAGTTCCACTCGGGTTCTTAGGACTTAATCCAGGCT
CTTTATTCCTCCCAGGCTGTGCCCCACCGCCTCCCAGCCCTGTCACTCAAACACACACGC
AGCTTTCCTGGTCATCCTGAAGATGCCGCACCCATTCTGTGCCCTAGGCGCTCTCCACTC
CCCAGAGTGTCTGGATACCTTAGTGAATCCTCATCCTTCTCCAAAATATAAATATTTCTT
TTCGAAGCCCATTCCATATTCTTATTTTATGCTGCTGTCACTTATAAGCCAAATAAACCC
GTTTCCTCTACTTGGCTTACATATCTCCCCTGAACATACTCAGGGCCCCCGAATGTGGCT
TTGGATTTTTTATGCAATTATGTGTGGACATGTCTGTCTCCTTGCAAAGGCTGTGAACTC
CCTGAAGTGCAGAGGTTTTCATTTTATCTTGATAGCATCAGCATCTAGTCATCTGGCAGG
TATTCAGTGCACATTTGAATGCATGAAAACAAAATCCAGGAATGCCTTTTAATTCTAAAG
AGGAAACTGATGAGTGAAACACAACTAATCAAGCTGTCTCATTATAGCCCCCTGAGAAAG
AAAAATGGTCCAAACCAGGCCTGCAGTAGAACTTTCTGCATGATGTAATTCTCAACCTTC
TTCTGGGAAGTAATTTGCATCCTTGATTAAATGCTTGAGCAATTCTCTGATACTTCTAAA
TGATTAAGAACTTCTGAGAAGTCAGAGTTGTTCAACCAACTGACTGACTAACCTAATAAT
CTTTGACCAGACTGTTTTTTCCTTACCAAATAAAACTTTGACACATGCTTATAAACAATT
TGTCTGGAAAGTTGTTCTTTCTGGTGGTGAGGACCTCTCCATGAGAACATGCCTCTCACA
AAGTATCTCCTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               571-682, - strand, RNAz p=0.934661

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               571-682, - strand, RNAz p=0.934661

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               571-814, gnl|bosTau2|chr16 (15321732-15321979)
               

               
               571-814, gnl|canFam2|chr8 (46051495-46051636)
               

               
               571-814, gnl|hg17|chr14 (68718064-68718233)
               

               
               571-814, gnl|panTro1|chr15 (68392980-68393149)
               

               
               571-814, gnl|rheMac2|chr7 (132310817-132310986)
               


               
               826-1046, gnl|bosTau2|chr16 (15322017-15322231)
               

               
               826-1046, gnl|Hg17|chr9 (77314222-77314002)

Aligned organism(s): 7 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               571-814, gnl|bosTau2|chr16 (15321732-15321979)
               

               
               571-814, gnl|canFam2|chr8 (46051495-46051636)
               

               
               571-814, gnl|hg17|chr14 (68718064-68718233)
               

               
               571-814, gnl|panTro1|chr15 (68392980-68393149)
               

               
               571-814, gnl|rheMac2|chr7 (132310817-132310986)
               


               
               826-1046, gnl|bosTau2|chr16 (15322017-15322231)
               

               
               826-1046, gnl|Hg17|chr9 (77314222-77314002)

	571-814, gnl\|bosTau2\|chr16 (15321732-15321979)
	571-814, gnl\|canFam2\|chr8 (46051495-46051636)
	571-814, gnl\|hg17\|chr14 (68718064-68718233)
	571-814, gnl\|panTro1\|chr15 (68392980-68393149)
	571-814, gnl\|rheMac2\|chr7 (132310817-132310986)

	826-1046, gnl\|bosTau2\|chr16 (15322017-15322231)
	826-1046, gnl\|Hg17\|chr9 (77314222-77314002)