Non-Coding RNA Search

Ss1.1-Lng1-LNG010089F07.5

Sequence:


               
               TTAGTTGAGCACTTTCTTATCCAGTGATATGGATAAGAGAGAATTGATGTTGGCCTCTAG
CAATCTCTGATTCTGATCCCTCAACTCGTTTGGTTACCCCTTCATGATGAAAATGCATTT
CCTACTATCGAACCAAAATGATCCATCACAACAAAAAGAATCACTCAAAAAACTAAAGAG
TAGTTCTTTCTAGAGCACCTAGGACAGTTCTTCAGCTCATTAAAGAATTAGTGAAGTTGT
TCATTTATTCAACAGGTAGTAAGTTTGTGTGTTTCCTAAATGTCTGACAAGTTGTGAAGC
CCGAGGATAGAGCAATGAGTCAATATAGGTGCCAACCCTTCTCTCTTAGTTAAAATTCAG
TGCAGGAGTAGAGATAACATGAATCAGAGAGTCACATAAAGATGAGAAGAATTCCTACTG
GGATGACAAAGAGTGCTGTGCCTTATGTATGAAAAGAAAAATCCTCTTGGTCATAGAGTT
GGGGAAGGCTTCTGGCTACATAAATGAGCTGAAATTTGATGGATGAGTAGGAAATACCTA
CTTGCAGGGGATGTGTGGGTAAATAGCATTCCATGAATTCCAGACATTCTGGAAAAGGAG
GAATAGTACAGGTGAAGGCCAGTGGTGAGAAGACTATGGGAAAAAGGTAGGTAGTGTGGC
TGGAAGAAGCAAGAGGAAGCTTGTTAGAAGGGAGATGAGAGAGCTGGACAAGGAAGAGCC
ATGTGGGGATGTATTGGCCATGTTAAGGATTTCAGTCTTCCTCCCAAGAGCAATGGAAGC
CATTGAGTTTTAAGGTAGGTGTAGGGGTTGGGGGCATGTGACATAATCATATTTGCTGTT
TGAAAAGATTACTCTGACAGAGAATGGACTGGACTGGATTGAGTGGTGGCAGACAGCCCA
GACAGGAGCCTGGGATAAGAGAAAATGGTGGCTTGATCCAGAAGGATGGCGGTACATCTC
CCTCTGGATTGTAGAGAATACAATCCAGAATTGTAGGTTGGCAAGAAGTAGATGGATCCA
GTAGTTCTTAGAGCCAGTTTGAGGGCTGATAATGATCCAGGGGTGTCTTTCTAAAATGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAGTTGAGCACTTTCTTATCCAGTGATATGGATAAGAGAGAATTGATGTTGGCCTCTAG
CAATCTCTGATTCTGATCCCTCAACTCGTTTGGTTACCCCTTCATGATGAAAATGCATTT
CCTACTATCGAACCAAAATGATCCATCACAACAAAAAGAATCACTCAAAAAACTAAAGAG
TAGTTCTTTCTAGAGCACCTAGGACAGTTCTTCAGCTCATTAAAGAATTAGTGAAGTTGT
TCATTTATTCAACAGGTAGTAAGTTTGTGTGTTTCCTAAATGTCTGACAAGTTGTGAAGC
CCGAGGATAGAGCAATGAGTCAATATAGGTGCCAACCCTTCTCTCTTAGTTAAAATTCAG
TGCAGGAGTAGAGATAACATGAATCAGAGAGTCACATAAAGATGAGAAGAATTCCTACTG
GGATGACAAAGAGTGCTGTGCCTTATGTATGAAAAGAAAAATCCTCTTGGTCATAGAGTT
GGGGAAGGCTTCTGGCTACATAAATGAGCTGAAATTTGATGGATGAGTAGGAAATACCTA
CTTGCAGGGGATGTGTGGGTAAATAGCATTCCATGAATTCCAGACATTCTGGAAAAGGAG
GAATAGTACAGGTGAAGGCCAGTGGTGAGAAGACTATGGGAAAAAGGTAGGTAGTGTGGC
TGGAAGAAGCAAGAGGAAGCTTGTTAGAAGGGAGATGAGAGAGCTGGACAAGGAAGAGCC
ATGTGGGGATGTATTGGCCATGTTAAGGATTTCAGTCTTCCTCCCAAGAGCAATGGAAGC
CATTGAGTTTTAAGGTAGGTGTAGGGGTTGGGGGCATGTGACATAATCATATTTGCTGTT
TGAAAAGATTACTCTGACAGAGAATGGACTGGACTGGATTGAGTGGTGGCAGACAGCCCA
GACAGGAGCCTGGGATAAGAGAAAATGGTGGCTTGATCCAGAAGGATGGCGGTACATCTC
CCTCTGGATTGTAGAGAATACAATCCAGAATTGTAGGTTGGCAAGAAGTAGATGGATCCA
GTAGTTCTTAGAGCCAGTTTGAGGGCTGATAATGATCCAGGGGTGTCTTTCTAAAATGCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               512-630, - strand, RNAz p=0.999104

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               512-630, - strand, RNAz p=0.999104

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-949, gnl|bosTau2|chr14 (14281247-14282165)
               

               
               1-949, gnl|Hg17|chr8 (103174846-103167937)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-949, gnl|bosTau2|chr14 (14281247-14282165)
               

               
               1-949, gnl|Hg17|chr8 (103174846-103167937)

	1-949, gnl\|bosTau2\|chr14 (14281247-14282165)
	1-949, gnl\|Hg17\|chr8 (103174846-103167937)