Non-Coding RNA Search

Ss1.1-Lng1-LNG010094G11.5

Sequence:


               
               AGTCGGCCTCCGGCGGAGGGAGAGGGGGAAGCTCGAGGGCGGGCGGCCGGGCGCGGAGAG
CGGCGGCGGCGGGGCCCCGGGCGGGCGCCTCCTCCCGGCCCGGAACGGCCCCCCTCCCGG
CGCAGGGGCAGGCCGGGGCGGGGGGCCCCGGCGCCCGCGCGGCCTCGGTCCCGTCGAGGA
GGCCGGGGAGCCGCCAGGGCGGGGCGATGCCGGGCGGCGGCGGCGGCCCCAGCCGGGGCC
GGTGACCATGGGCATTGCCGAGTCCACGCCGGACGAGCTGCCGTCGGACGCGGAGGAGCA
GCTGCGCAACGGCGAGCAACAGTTGGAGCTGAGCGGGAGGCGGCTGAGGCGGCTGCCTAG
TGCTGTGTGCGCTTTGAGCCGCCTGCAGAAACTGTACGTGAGCGGCACCGGGCTGCGCGA
GCTGCCCGAGGAGATCGAGGAGCTGCGCGAGCTGCGCATCCTGGCGCTCGACTTCAACAA
ACTCGAGCGTCTGCCCGACGGCCTGTGTCGCCTGCCGCGCCTCACGCGCCTCTACCTGGG
CGGCAACCGGCTGCTGGCGCTGCCCGCCGACTTCGCGCAGCTGCAAAGCCTGCGCTGCCT
CTGGATCGAGGGCAACTTCCTGAGGCGATTCCCGCGGCCGCTGCTGCGCCTGGTGGCGCT
GCAGTCGCTGCAAATGGGCGACAACCGGTTGCGCGCGCTGCCCGCGGAGCTGCCGCGCAT
GACTGGCTTGCGCGGCCTCTGGCTCTACGGTAACCGCTTCGAGGAGTTCCCGCCCGCCTT
GCTACGCATGGGCCGCCTGCACATCCTCGACCTGGACCGTAACCGCCTGGGCGGCTTCCC
GGACCTGCATCCGCTGCGCGCCCTGCGCGTCTTCTCCTACGATCACAACCCGGTCACTGG
GCCCCCGCGCGTCGCCGACACCGTCTTCCTTGTGGGCGAGGGCGCTGTCGAGCGCATGGC
CGAGCGCGACGAGGCCACGCCCCGGGCGCCGGCACGGTGGCCCGTGGGGGCCTTTGGGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTCGGCCTCCGGCGGAGGGAGAGGGGGAAGCTCGAGGGCGGGCGGCCGGGCGCGGAGAG
CGGCGGCGGCGGGGCCCCGGGCGGGCGCCTCCTCCCGGCCCGGAACGGCCCCCCTCCCGG
CGCAGGGGCAGGCCGGGGCGGGGGGCCCCGGCGCCCGCGCGGCCTCGGTCCCGTCGAGGA
GGCCGGGGAGCCGCCAGGGCGGGGCGATGCCGGGCGGCGGCGGCGGCCCCAGCCGGGGCC
GGTGACCATGGGCATTGCCGAGTCCACGCCGGACGAGCTGCCGTCGGACGCGGAGGAGCA
GCTGCGCAACGGCGAGCAACAGTTGGAGCTGAGCGGGAGGCGGCTGAGGCGGCTGCCTAG
TGCTGTGTGCGCTTTGAGCCGCCTGCAGAAACTGTACGTGAGCGGCACCGGGCTGCGCGA
GCTGCCCGAGGAGATCGAGGAGCTGCGCGAGCTGCGCATCCTGGCGCTCGACTTCAACAA
ACTCGAGCGTCTGCCCGACGGCCTGTGTCGCCTGCCGCGCCTCACGCGCCTCTACCTGGG
CGGCAACCGGCTGCTGGCGCTGCCCGCCGACTTCGCGCAGCTGCAAAGCCTGCGCTGCCT
CTGGATCGAGGGCAACTTCCTGAGGCGATTCCCGCGGCCGCTGCTGCGCCTGGTGGCGCT
GCAGTCGCTGCAAATGGGCGACAACCGGTTGCGCGCGCTGCCCGCGGAGCTGCCGCGCAT
GACTGGCTTGCGCGGCCTCTGGCTCTACGGTAACCGCTTCGAGGAGTTCCCGCCCGCCTT
GCTACGCATGGGCCGCCTGCACATCCTCGACCTGGACCGTAACCGCCTGGGCGGCTTCCC
GGACCTGCATCCGCTGCGCGCCCTGCGCGTCTTCTCCTACGATCACAACCCGGTCACTGG
GCCCCCGCGCGTCGCCGACACCGTCTTCCTTGTGGGCGAGGGCGCTGTCGAGCGCATGGC
CGAGCGCGACGAGGCCACGCCCCGGGCGCCGGCACGGTGGCCCGTGGGGGCCTTTGGGGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|27681313|ref|XP_219578.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|27681313|ref|XP_219578.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               353-472, - strand, RNAz p=0.946973
               

               
               553-672, - strand, RNAz p=0.785049

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               353-472, - strand, RNAz p=0.946973
               

               
               553-672, - strand, RNAz p=0.785049

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-1016, gnl|bosTau2|chr29 (31245911-31246923)
               

               
               1-1016, gnl|Hg17|chr11 (61032797-61033815)
               

               
               1-1016, gnl|Mm7|chr19 (10137676-10136672)
               


               
               155-708, gnl|bosTau2|chr27 (15230664-15231209)
               

               
               155-708, gnl|Hg17|chr8 (8788403-8787314)
               

               
               155-708, gnl|Mm7|chr8 (34353285-34354383)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1016, gnl|bosTau2|chr29 (31245911-31246923)
               

               
               1-1016, gnl|Hg17|chr11 (61032797-61033815)
               

               
               1-1016, gnl|Mm7|chr19 (10137676-10136672)
               


               
               155-708, gnl|bosTau2|chr27 (15230664-15231209)
               

               
               155-708, gnl|Hg17|chr8 (8788403-8787314)
               

               
               155-708, gnl|Mm7|chr8 (34353285-34354383)

	353-472, - strand, RNAz p=0.946973
	553-672, - strand, RNAz p=0.785049

	1-1016, gnl\|bosTau2\|chr29 (31245911-31246923)
	1-1016, gnl\|Hg17\|chr11 (61032797-61033815)
	1-1016, gnl\|Mm7\|chr19 (10137676-10136672)

	155-708, gnl\|bosTau2\|chr27 (15230664-15231209)
	155-708, gnl\|Hg17\|chr8 (8788403-8787314)
	155-708, gnl\|Mm7\|chr8 (34353285-34354383)