Non-Coding RNA Search

Ss1.1-Lng1-LNG010095E10.5

Sequence:


               
               AGAATCAGGGTTCAGACCGAGGGCCCAGCTCATCTCCCTCCCACGAGTGAGTTCAACGTG
TGCCACATCACTTTGTTTTAAGTAAGGCTTCGTATTGCAAAGGGAAGGGCCTCAGAAGAA
AAGGCTAAAGCTTTGGTGAGTAGTCAGTCTGTTACTTGTTGGGAGGCCTGGGTGGGTGAA
TGACTGGATTCATGGGTGATGGCCGGATGGATGGATGGATGGGTAGGTAGGTAGAGACAG
ATACGGGTCAATATTTACAGTAACCGTGTGAGGCAGATGTGACCTCCCCAGTTTATGGAG
ACATAACATATTCATTCATATGCCCAACATCACTGCCCTAGGAATGCCAGAAAAGGAAAT
AAGTTGTGGGCGGGGGGAACGTTTCAAAATAGCCCTCTCTCCATTCTACCACAAGCCTCG
AAAGTAGGAAAGGAAGGTGAAAACAATCTGAAGCCGCTCATCCCAAAAGCCAAAAAATGG
CAAAAATCTGTGTCACTAATATCCCTACCTTTTAGTAAAACTAGTGCAAGAGAAAAGGAA
ATTTGACTATTGGTCCAAATACATGAGAAACCCATTCTTGTATTAAATAGTGCAAGAACA
CATTCATCTCAGAAAAGCATGTATTCATAGGCACCATATTTTATGGGAATTTGCAGATTT
TAAAAGGCATAATATTGCCTAGTTGCCAGAATTTTTCCACTTAGCATCCTTCAGCTCAGC
ACTGAAAATTCTGGAAAACACTTTCACCACTTTATGAACCATATGCAGAGTTTGATTTTT
CTCCAATTTTTTTTTCATTTGTTATTATCATCATCAGGGAGGATTACATCTCATCTACTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAATCAGGGTTCAGACCGAGGGCCCAGCTCATCTCCCTCCCACGAGTGAGTTCAACGTG
TGCCACATCACTTTGTTTTAAGTAAGGCTTCGTATTGCAAAGGGAAGGGCCTCAGAAGAA
AAGGCTAAAGCTTTGGTGAGTAGTCAGTCTGTTACTTGTTGGGAGGCCTGGGTGGGTGAA
TGACTGGATTCATGGGTGATGGCCGGATGGATGGATGGATGGGTAGGTAGGTAGAGACAG
ATACGGGTCAATATTTACAGTAACCGTGTGAGGCAGATGTGACCTCCCCAGTTTATGGAG
ACATAACATATTCATTCATATGCCCAACATCACTGCCCTAGGAATGCCAGAAAAGGAAAT
AAGTTGTGGGCGGGGGGAACGTTTCAAAATAGCCCTCTCTCCATTCTACCACAAGCCTCG
AAAGTAGGAAAGGAAGGTGAAAACAATCTGAAGCCGCTCATCCCAAAAGCCAAAAAATGG
CAAAAATCTGTGTCACTAATATCCCTACCTTTTAGTAAAACTAGTGCAAGAGAAAAGGAA
ATTTGACTATTGGTCCAAATACATGAGAAACCCATTCTTGTATTAAATAGTGCAAGAACA
CATTCATCTCAGAAAAGCATGTATTCATAGGCACCATATTTTATGGGAATTTGCAGATTT
TAAAAGGCATAATATTGCCTAGTTGCCAGAATTTTTCCACTTAGCATCCTTCAGCTCAGC
ACTGAAAATTCTGGAAAACACTTTCACCACTTTATGAACCATATGCAGAGTTTGATTTTT
CTCCAATTTTTTTTTCATTTGTTATTATCATCATCAGGGAGGATTACATCTCATCTACTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               544-802, - strand, RNAz p=0.948943

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               544-802, - strand, RNAz p=0.948943

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               655-733, - strand, RNAmicro p=0.907982

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               655-733, - strand, RNAmicro p=0.907982

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-840, gnl|bosTau2|chr6 (52598649-52599488)
               

               
               1-840, gnl|Hg17|chr4 (81274463-81275351)
               

               
               1-840, gnl|Mm7|chr5 (97166121-97166913)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-840, gnl|bosTau2|chr6 (52598649-52599488)
               

               
               1-840, gnl|Hg17|chr4 (81274463-81275351)
               

               
               1-840, gnl|Mm7|chr5 (97166121-97166913)

	1-840, gnl\|bosTau2\|chr6 (52598649-52599488)
	1-840, gnl\|Hg17\|chr4 (81274463-81275351)
	1-840, gnl\|Mm7\|chr5 (97166121-97166913)