Non-Coding RNA Search

Ss1.1-Lng1-LNG010099C06.5

Sequence:


               
               AAGACTGACTGATTTTCCAGATCAATCACAGAGGGTGGAGCCATGCAGACTGAGGCGTGG
GTCATCTCTTGGGTGGAGTTTTAGAGATTTGCCTTACATTGTACCTCGGGGGTGGCGGGG
GGTGCGCAGGGAGAGAGGACGAGAGGTGGAGTCAGGCGGCCCACATCTCGGCCTGGTTGA
GCTGACCGCCTTCTAGCTCTGTGACCTTGAACAAGTTGCTTAACCTTCCTGAGGCTCATG
AGGACAATAAGACCCCTGTCCAGGCTTGGTTTGAGGATCAAGGGGGTGGGAAAGCACTTT
GTAAATTGCAAAGAGCTGAGTAAACATCAGGCACTCGGGACATTGTTCCGGTGTTAAGTA
AGAGCAGTGCCATTTGTAAACCAGGTTTTGGGTGCATCCCCAGCATTGTTGGTGAGGAGT
CCAGCCTGCTCTGCACGCTCTCCTTTAAGGAAGACTGGATCTCCCCATCGGCCGTCTTCT
AGCTGAGATGCTAAATGGAGCCATGGGTGGTACCTGGGGTCTTTCTCCTTCCCCTGCAGA
CTCTGAGGGGGCCTAGATGTGTCTCCCCTCCTCTCTCTCAGATGGAATTGTATTTATAGC
CTGGTATAAATACAATCAGAAGGTTCCTATAAAACTCTGTTATTACTGCAGCACGAAGTT
AGACGTGCTTGAGGTTTCGGCTTCTTGGCTCTTCCATGCGGCAATGAATATTTTATGGGA
AAGGAAATACTTAGTGTCTGACTCTTTTTATAGTGCAGCTACTCACAGGGCTGGTAACTG
TCCAGATCTCTCCAAAATCAAAAGCGTTGCCTGTGTCCATCTCTCTGCTCCTTTCTTCAC
CAGAATCCATCCTGCTGGTGTTGGTGTTCTCCGGGTGAATCCGTCCATTTACGCCATGTG
TGGGGTGCCCTTTCCGACCCTAATGAACACCCTAAACCCAAGGAGTTGGCTGCTCCCCAG
CTCCGCCCCACCTCTTCTGGCACTTGGTGGTACTGGTCAGCCCCAGGAGAGGTGAGCTGG
AAGGATGCCCTGTGGGTGCTCCACTTGAAGGCCTCCATCCTCTTTCTGCCTTGCTGCCCT
CACTCAGTGCCTGTCGCCCCCGGAGGATGTGACCCAGCCTCTCCAAAGCCTCCTTGGATC
TTGGGATTCAGAAAGCACTCAGTGAACGTAAGGTCCGGCAGAGCCCAAGGGGCTCCTCCC
TCTTAAGGCCTGAGCTTGGGGTGGAAGGCCTTACCCAGAGCAGCCAGCAGGTCAATGAGA
TGTCCCTTTCAGGCCCTTTTACTGTGGTCCCTGTGGTGACCACACACCTAAGACCAGAAA
ATGGGGCCTGGGCAGTCTTGGCCCTGGCTTGCTAGGCCCAGGCCTTTAAGTAGAGGAAAT
GGGTCTCCTGGCAGGTCAGCATTGGTGGAAATGGCTCCTCTGGCACCCAAGGCCGTCCTG
GCACANGTGCTCAGCTGGATTGGCCCAGTGATCCTC------------TGACAACAGCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGACTGACTGATTTTCCAGATCAATCACAGAGGGTGGAGCCATGCAGACTGAGGCGTGG
GTCATCTCTTGGGTGGAGTTTTAGAGATTTGCCTTACATTGTACCTCGGGGGTGGCGGGG
GGTGCGCAGGGAGAGAGGACGAGAGGTGGAGTCAGGCGGCCCACATCTCGGCCTGGTTGA
GCTGACCGCCTTCTAGCTCTGTGACCTTGAACAAGTTGCTTAACCTTCCTGAGGCTCATG
AGGACAATAAGACCCCTGTCCAGGCTTGGTTTGAGGATCAAGGGGGTGGGAAAGCACTTT
GTAAATTGCAAAGAGCTGAGTAAACATCAGGCACTCGGGACATTGTTCCGGTGTTAAGTA
AGAGCAGTGCCATTTGTAAACCAGGTTTTGGGTGCATCCCCAGCATTGTTGGTGAGGAGT
CCAGCCTGCTCTGCACGCTCTCCTTTAAGGAAGACTGGATCTCCCCATCGGCCGTCTTCT
AGCTGAGATGCTAAATGGAGCCATGGGTGGTACCTGGGGTCTTTCTCCTTCCCCTGCAGA
CTCTGAGGGGGCCTAGATGTGTCTCCCCTCCTCTCTCTCAGATGGAATTGTATTTATAGC
CTGGTATAAATACAATCAGAAGGTTCCTATAAAACTCTGTTATTACTGCAGCACGAAGTT
AGACGTGCTTGAGGTTTCGGCTTCTTGGCTCTTCCATGCGGCAATGAATATTTTATGGGA
AAGGAAATACTTAGTGTCTGACTCTTTTTATAGTGCAGCTACTCACAGGGCTGGTAACTG
TCCAGATCTCTCCAAAATCAAAAGCGTTGCCTGTGTCCATCTCTCTGCTCCTTTCTTCAC
CAGAATCCATCCTGCTGGTGTTGGTGTTCTCCGGGTGAATCCGTCCATTTACGCCATGTG
TGGGGTGCCCTTTCCGACCCTAATGAACACCCTAAACCCAAGGAGTTGGCTGCTCCCCAG
CTCCGCCCCACCTCTTCTGGCACTTGGTGGTACTGGTCAGCCCCAGGAGAGGTGAGCTGG
AAGGATGCCCTGTGGGTGCTCCACTTGAAGGCCTCCATCCTCTTTCTGCCTTGCTGCCCT
CACTCAGTGCCTGTCGCCCCCGGAGGATGTGACCCAGCCTCTCCAAAGCCTCCTTGGATC
TTGGGATTCAGAAAGCACTCAGTGAACGTAAGGTCCGGCAGAGCCCAAGGGGCTCCTCCC
TCTTAAGGCCTGAGCTTGGGGTGGAAGGCCTTACCCAGAGCAGCCAGCAGGTCAATGAGA
TGTCCCTTTCAGGCCCTTTTACTGTGGTCCCTGTGGTGACCACACACCTAAGACCAGAAA
ATGGGGCCTGGGCAGTCTTGGCCCTGGCTTGCTAGGCCCAGGCCTTTAAGTAGAGGAAAT
GGGTCTCCTGGCAGGTCAGCATTGGTGGAAATGGCTCCTCTGGCACCCAAGGCCGTCCTG
GCACANGTGCTCAGCTGGATTGGCCCAGTGATCCTC------------TGACAACAGCAG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               515-634, - strand, RNAz p=0.562841
               

               
               1138-1426, + strand, RNAz p=0.999221

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               515-634, - strand, RNAz p=0.562841
               

               
               1138-1426, + strand, RNAz p=0.999221

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               27-1426, gnl|bosTau2|chr15 (11027768-11026367)
               

               
               27-1426, gnl|Hg17|chr11 (113508281-113509703)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               27-1426, gnl|bosTau2|chr15 (11027768-11026367)
               

               
               27-1426, gnl|Hg17|chr11 (113508281-113509703)

	515-634, - strand, RNAz p=0.562841
	1138-1426, + strand, RNAz p=0.999221

	27-1426, gnl\|bosTau2\|chr15 (11027768-11026367)
	27-1426, gnl\|Hg17\|chr11 (113508281-113509703)