Non-Coding RNA Search

Ss1.1-Lng1-LNG010100F11.5

Sequence:


               
               TTTGGAAGAGAGGCGGGGAAAAGCCTCCCTAGCAATTTATAAATGAAAAACCAGATCTCA
CAGGAAGTTGATATTCAGACCAAATTCCCTGCTTAGTCCAAGCAAGGGGCTCATCCTAGG
TGCTGATTTTATTTTATTTTATTTTTTTGATTCTCTAATAGTTGCTACCTTTTAAAAAAT
CCCTTCTTACCGGGTCTTGTGTTAGTTCTGGCATTTTCATTTGGTGGCCTCAGCACTTTT
TATTGTTTGAATCCTAAATGAATAACATTTTCATGTAGACCATTTCCAAAGTCGTTTTGA
TAAAAATCATTCTTGTGCGTGTTTTTCTTTTTTCTCTAAAACATTGTAAACATCTTGAAA
AAAGAATCATGCCCCTTCCTGTCCAACCTTTCCATAAAGAGTTAATTTTAAGGCTCTTCC
CCAGCAGATAAATAATGCATGTTTGTTTATGCTGGCTAATTTTTCTGGTAACAAATGATT
TTAGCTGAATTGGGATGTGCTACTGCTCCATGAATTGTGTGTCATTTATCTTGCCTCTAT
CAGACTATTTACCAGTGCTGTTTTGACTGTCTCTATGAGAGTTTATCACGTCTTTTAGCC
CCCCTTTGGGTATGCCCAAGGCACGTGAAAGTTCCCAGGCCAGGAATCAAACCCAAGCCA
CAGCAGTGACAATTCCAGATCCTTAACCACTGGGCCACCAGGGAACTCCCAGTCATCTTT
TAGTTTCACTCATCTCTGGGTTATTTTCTTTATTGCTATAGTCCATCAGCCAAGTCATAT
CAACTGAGGGAGAATTATTTTCTGTTATTATTACTTTATGTAAAGGGCCAACTTTAAAGC
CCTTCCTAGCAGGATAGCTATGATTTTGACAGTCTATGAAATAGAGCCACAATCTTCTCT
TCACTTGATAGACTCTCCCATGTGCATTGACGTGGCTTCATTTTTTTCAACTTGTTTCCT
CTTTTCTTCAGTTCCAGCCCTGCATGCTCTTCGTTTCTGGCTCATTTCTAAGACTCTGTA
GTTCAGATTTGCCAGATAAATGCACTGTTAAAATCAGCTTTCTCAGTGATAAACTAAAAT
TAGCAAGTGTGGATGGTAGTATGTGTTGCAGACTGCTCACCTCTGCCCAGCTCTCAGAAG
GATGTTTTATCCATGAGATCCCTGTTAAAAGTAGAGGAAGGGGGTTGAAAGAGCTAAAAG
TTTTTCAGCTCTTGGAATAAAGCAGAAGTACTAGTGTTCTGACAAACT------------
CATGTAGATATTTCCATCTGCAAGAGTCATTTTNAATGTTTGGGTTTTGTCACCTGATAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGGAAGAGAGGCGGGGAAAAGCCTCCCTAGCAATTTATAAATGAAAAACCAGATCTCA
CAGGAAGTTGATATTCAGACCAAATTCCCTGCTTAGTCCAAGCAAGGGGCTCATCCTAGG
TGCTGATTTTATTTTATTTTATTTTTTTGATTCTCTAATAGTTGCTACCTTTTAAAAAAT
CCCTTCTTACCGGGTCTTGTGTTAGTTCTGGCATTTTCATTTGGTGGCCTCAGCACTTTT
TATTGTTTGAATCCTAAATGAATAACATTTTCATGTAGACCATTTCCAAAGTCGTTTTGA
TAAAAATCATTCTTGTGCGTGTTTTTCTTTTTTCTCTAAAACATTGTAAACATCTTGAAA
AAAGAATCATGCCCCTTCCTGTCCAACCTTTCCATAAAGAGTTAATTTTAAGGCTCTTCC
CCAGCAGATAAATAATGCATGTTTGTTTATGCTGGCTAATTTTTCTGGTAACAAATGATT
TTAGCTGAATTGGGATGTGCTACTGCTCCATGAATTGTGTGTCATTTATCTTGCCTCTAT
CAGACTATTTACCAGTGCTGTTTTGACTGTCTCTATGAGAGTTTATCACGTCTTTTAGCC
CCCCTTTGGGTATGCCCAAGGCACGTGAAAGTTCCCAGGCCAGGAATCAAACCCAAGCCA
CAGCAGTGACAATTCCAGATCCTTAACCACTGGGCCACCAGGGAACTCCCAGTCATCTTT
TAGTTTCACTCATCTCTGGGTTATTTTCTTTATTGCTATAGTCCATCAGCCAAGTCATAT
CAACTGAGGGAGAATTATTTTCTGTTATTATTACTTTATGTAAAGGGCCAACTTTAAAGC
CCTTCCTAGCAGGATAGCTATGATTTTGACAGTCTATGAAATAGAGCCACAATCTTCTCT
TCACTTGATAGACTCTCCCATGTGCATTGACGTGGCTTCATTTTTTTCAACTTGTTTCCT
CTTTTCTTCAGTTCCAGCCCTGCATGCTCTTCGTTTCTGGCTCATTTCTAAGACTCTGTA
GTTCAGATTTGCCAGATAAATGCACTGTTAAAATCAGCTTTCTCAGTGATAAACTAAAAT
TAGCAAGTGTGGATGGTAGTATGTGTTGCAGACTGCTCACCTCTGCCCAGCTCTCAGAAG
GATGTTTTATCCATGAGATCCCTGTTAAAAGTAGAGGAAGGGGGTTGAAAGAGCTAAAAG
TTTTTCAGCTCTTGGAATAAAGCAGAAGTACTAGTGTTCTGACAAACT------------
CATGTAGATATTTCCATCTGCAAGAGTCATTTTNAATGTTTGGGTTTTGTCACCTGATAT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               752-864, - strand, RNAz p=0.938392
               

               
               1133-1248, + strand, RNAz p=0.624723

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               752-864, - strand, RNAz p=0.938392
               

               
               1133-1248, + strand, RNAz p=0.624723

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               1-597, gnl|bosTau2|chr22 (3383265-3382663)
               

               
               1-597, gnl|Hg17|chr3 (30650595-30651201)
               


               
               713-1308, gnl|bosTau2|chr22 (3382672-3382069)
               

               
               713-1308, gnl|Hg17|chr3 (30651192-30651797)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-597, gnl|bosTau2|chr22 (3383265-3382663)
               

               
               1-597, gnl|Hg17|chr3 (30650595-30651201)
               


               
               713-1308, gnl|bosTau2|chr22 (3382672-3382069)
               

               
               713-1308, gnl|Hg17|chr3 (30651192-30651797)

	752-864, - strand, RNAz p=0.938392
	1133-1248, + strand, RNAz p=0.624723

	1-597, gnl\|bosTau2\|chr22 (3383265-3382663)
	1-597, gnl\|Hg17\|chr3 (30650595-30651201)

	713-1308, gnl\|bosTau2\|chr22 (3382672-3382069)
	713-1308, gnl\|Hg17\|chr3 (30651192-30651797)