Non-Coding RNA Search

Ss1.1-Lng1-LNG010103A07.5

Sequence:


               
               CCCGTGCCTCCCCCTGGCTCTCTGTCCTCACTGTTCTCTCCCCGCCAGGATGACAACTGG
GGCGAGACCACCACGGCCATCACGGGCACATCGGAGCACAGCATCTCGCAGGAGGACATC
GCCCGCATCAGCAAGGACATGGAGGACAGCGTGGGGCTGGACTGCAGGCGCTACCTGGGC
CTCACGGTGGCCGCGGTGCTCGGACTCCTGGTCTTCCTCACCCCCATCGCCTTCATCCTG
CTGCCCCCCATCCTGTGGCGGGACGAGCTGGAGCCTTGCGGCACCATCTGCGAGGGACTC
TTCATTTCCGTGGCCTTCAAGCTCCTCATTCTGCTCATCGGCACCTGGGCGCTGTTCTTC
CGCAAGCAGAGAGCCGACGTGCCGCGGGTCTTCGTGTTCCGTGCCCTTCTCTTGGTCCTC
ATCTTTCTTTTCGTCGTCTCCTATTGGCTTTTCTACGGGGTCCGCATCTTGGACTCTCGG
GACCGGAATTACCAGGGCATCGTGCAATACGCCGTCTCCCTCGTGGACGCCCTCCTCTTC
ATCCACTACCTGGCCATCGTCCTGCTGGAGCTCAGGCAGCTGCAGCCCATGTTCACGCTG
CAGGTGGTCCGCTCCACCGACGGCGAGTCCCGCTTCTACAGCTTGGGACACCTGAGTATC
CAGCGAGCTGCGTTGGTGGTTCTGGAAAACTACTATAAAGATTTCACCATCTATAACCCC
AACCTCCTAACAGCCTCCAAATTCCGAGCAGCCAAGCACATGGCCGGGCTGAAGGTCTAC
AACGTAGATGGCCCCAGTAACAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCGTGCCTCCCCCTGGCTCTCTGTCCTCACTGTTCTCTCCCCGCCAGGATGACAACTGG
GGCGAGACCACCACGGCCATCACGGGCACATCGGAGCACAGCATCTCGCAGGAGGACATC
GCCCGCATCAGCAAGGACATGGAGGACAGCGTGGGGCTGGACTGCAGGCGCTACCTGGGC
CTCACGGTGGCCGCGGTGCTCGGACTCCTGGTCTTCCTCACCCCCATCGCCTTCATCCTG
CTGCCCCCCATCCTGTGGCGGGACGAGCTGGAGCCTTGCGGCACCATCTGCGAGGGACTC
TTCATTTCCGTGGCCTTCAAGCTCCTCATTCTGCTCATCGGCACCTGGGCGCTGTTCTTC
CGCAAGCAGAGAGCCGACGTGCCGCGGGTCTTCGTGTTCCGTGCCCTTCTCTTGGTCCTC
ATCTTTCTTTTCGTCGTCTCCTATTGGCTTTTCTACGGGGTCCGCATCTTGGACTCTCGG
GACCGGAATTACCAGGGCATCGTGCAATACGCCGTCTCCCTCGTGGACGCCCTCCTCTTC
ATCCACTACCTGGCCATCGTCCTGCTGGAGCTCAGGCAGCTGCAGCCCATGTTCACGCTG
CAGGTGGTCCGCTCCACCGACGGCGAGTCCCGCTTCTACAGCTTGGGACACCTGAGTATC
CAGCGAGCTGCGTTGGTGGTTCTGGAAAACTACTATAAAGATTTCACCATCTATAACCCC
AACCTCCTAACAGCCTCCAAATTCCGAGCAGCCAAGCACATGGCCGGGCTGAAGGTCTAC
AACGTAGATGGCCCCAGTAACAAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|62644104|ref|XP_342305.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62644104|ref|XP_342305.2|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               534-653, - strand, RNAz p=0.677214

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               534-653, - strand, RNAz p=0.677214

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               15-656, gnl|bosTau2|chr3 (23840596-23839955)
               

               
               15-656, gnl|Hg17|chr1 (115918297-115918931)
               

               
               15-656, gnl|Mm7|chr3 (101978476-101977843)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-656, gnl|bosTau2|chr3 (23840596-23839955)
               

               
               15-656, gnl|Hg17|chr1 (115918297-115918931)
               

               
               15-656, gnl|Mm7|chr3 (101978476-101977843)

	15-656, gnl\|bosTau2\|chr3 (23840596-23839955)
	15-656, gnl\|Hg17\|chr1 (115918297-115918931)
	15-656, gnl\|Mm7\|chr3 (101978476-101977843)