Ss1.1-Lng1-LNG010104G09.5
|
GGGCTGAAGGCTCAAGCAGCCTGCCTTTCCGACCCCAGGTCACCCCACCAAATTTCCAGG
CCCCCCAAGATGGTGCAAAGTGAGTTTCAACTACAGCCCGGAGCAGGCGGACGAGCTGAA
CGACCCCAGGTCACCCCACCAAATTTCCAGGCCCCCCAAGATGGTGCAAAGTGAGTTTCA
ACTACAGCCCGGAGCAGGCGGACGAGCTGAAGCTGCAAACTGGGGAGATTGTGGAAGTCA
TAAAGGAGGCCTTGTTAACCCAGACATGCCTTCAATCAGCCTTGGCCCCCAACGGCCTCC
CAAGTTGAGCAGCTTGACCTATGACAGCCCTCCAGACTACCTGCGGACAGTCTCCCATCC
TGAGACTTACAGGGTCCTGTTTGACTACCATCCCGAGGCCCCAGATGAGTTGGCACTGCG
GAGGGGGGACGAGGTGAAAGTACTGAGGAAGACCACAGAGGATAAGGGCTGGTGGGAAGG
AGAGTCTCAAGGCAGAAGAGGACTCTTTCCAGATAACTTTGTGCTCCCACCACCCCCAGT
GAGTACGGAGCCAGGCACTCAGGTGGCAAGGGGCAGGCTACTCTGGACAAACTTGGAGGT
CGTGGCACTCACTGGACACGGCTGGAAGGCCACCTGCAAATGAGGGTGGCCTANAAATGT
GAGGGCTTCTCTTCAGGTTCTGACACTTGTTCTCCGCACAGATTAAGAAGCTGGCCCCAC
GGAAAGTGGTATCCCGGGAATCANGTGGGTGTCTGG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGGCTGAAGGCTCAAGCAGCCTGCCTTTCCGACCCCAGGTCACCCCACCAAATTTCCAGG
CCCCCCAAGATGGTGCAAAGTGAGTTTCAACTACAGCCCGGAGCAGGCGGACGAGCTGAA
CGACCCCAGGTCACCCCACCAAATTTCCAGGCCCCCCAAGATGGTGCAAAGTGAGTTTCA
ACTACAGCCCGGAGCAGGCGGACGAGCTGAAGCTGCAAACTGGGGAGATTGTGGAAGTCA
TAAAGGAGGCCTTGTTAACCCAGACATGCCTTCAATCAGCCTTGGCCCCCAACGGCCTCC
CAAGTTGAGCAGCTTGACCTATGACAGCCCTCCAGACTACCTGCGGACAGTCTCCCATCC
TGAGACTTACAGGGTCCTGTTTGACTACCATCCCGAGGCCCCAGATGAGTTGGCACTGCG
GAGGGGGGACGAGGTGAAAGTACTGAGGAAGACCACAGAGGATAAGGGCTGGTGGGAAGG
AGAGTCTCAAGGCAGAAGAGGACTCTTTCCAGATAACTTTGTGCTCCCACCACCCCCAGT
GAGTACGGAGCCAGGCACTCAGGTGGCAAGGGGCAGGCTACTCTGGACAAACTTGGAGGT
CGTGGCACTCACTGGACACGGCTGGAAGGCCACCTGCAAATGAGGGTGGCCTANAAATGT
GAGGGCTTCTCTTCAGGTTCTGACACTTGTTCTCCGCACAGATTAAGAAGCTGGCCCCAC
GGAAAGTGGTATCCCGGGAATCANGTGGGTGTCTGG
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
118-249, gnl|bosTau2|chr3 (76617796-76617665) |
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118-249, gnl|Hg17|chr1 (36441849-36441980) |
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118-249, gnl|Mm7|chr4 (125607229-125607099) |
| |
|
348-451, gnl|bosTau2|chr3 (76617045-76616942) |
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348-451, gnl|canFam2|chr15 (8961330-8961192) |
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348-451, gnl|fr1|chrUn (99379743-99379592) |
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348-451, gnl|hg17|chr1 (36442766-36442912) |
|
348-451, gnl|Hg17|chr1 (36442800-36442903) |
|
348-451, gnl|mm7|chr4 (125606301-125606163) |
|
348-451, gnl|Mm7|chr4 (125606273-125606170) |
|
348-451, gnl|monDom2|scaffold_43 (13867997-13867851) |
|
348-451, gnl|oryCun1|scaffold_198624 (57613-57751) |
|
348-451, gnl|panTro1|chr1 (37274716-37274862) |
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348-451, gnl|rheMac2|chr1 (39175369-39175515) |
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348-451, gnl|rn3|chr5 (145529187-145529049) |
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348-451, gnl|tetNig1|chrUn_random (30751452-30751580) |
| |
|
454-756, gnl|bosTau2|chr3 (76616827-76616525) |
|
454-756, gnl|Hg17|chr1 (36443085-36444296) |
|
454-756, gnl|Mm7|chr4 (125606066-125605103) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
118-249, gnl|bosTau2|chr3 (76617796-76617665) |
|
118-249, gnl|Hg17|chr1 (36441849-36441980) |
|
118-249, gnl|Mm7|chr4 (125607229-125607099) |
| |
|
348-451, gnl|bosTau2|chr3 (76617045-76616942) |
|
348-451, gnl|canFam2|chr15 (8961330-8961192) |
|
348-451, gnl|fr1|chrUn (99379743-99379592) |
|
348-451, gnl|hg17|chr1 (36442766-36442912) |
|
348-451, gnl|Hg17|chr1 (36442800-36442903) |
|
348-451, gnl|mm7|chr4 (125606301-125606163) |
|
348-451, gnl|Mm7|chr4 (125606273-125606170) |
|
348-451, gnl|monDom2|scaffold_43 (13867997-13867851) |
|
348-451, gnl|oryCun1|scaffold_198624 (57613-57751) |
|
348-451, gnl|panTro1|chr1 (37274716-37274862) |
|
348-451, gnl|rheMac2|chr1 (39175369-39175515) |
|
348-451, gnl|rn3|chr5 (145529187-145529049) |
|
348-451, gnl|tetNig1|chrUn_random (30751452-30751580) |
| |
|
454-756, gnl|bosTau2|chr3 (76616827-76616525) |
|
454-756, gnl|Hg17|chr1 (36443085-36444296) |
|
454-756, gnl|Mm7|chr4 (125606066-125605103) |
