Non-Coding RNA Search

Ss1.1-Lng1-LNG010110C06.5

Sequence:


               
               TTTACAACAGAGGCCTCAACAAAATGTGCCCAAAGGGAGCTGAGGGAGGTGAGAGAAATA
CCACAGAGCCACAGGATAGTGAAGATGGACAGCTGAGAACTAAGGTGGATAGGTGAGCCT
GTGCTCCTGAAACAGCCTGCAGCCGAGCATAGAGTGATGGGAGAAGGAGCTTTAAAAGAA
AGATGAGAGTCTTACTGCACTGGGTAGAGACCACATTAGAGAATGAATGTATCACTTGTT
CTCAGATTTTGGTATATAAGATACAGGTACCCAATCCTAAAGATGCCCAGTGGAAGCCTT
TGGAGTAAAGACTCGAAGTGTATGTTTTGAACAACACCCACTGTACCCCATGATTCTGTG
ACTCATTACTGCATGTAAATATGATAAAGACCCAGACTGTCTCCCAGGCTTTTGCAGCTT
CTGTGTGGGTATGTGTTTGTGCTGGAGTCAAGATGCTGGGGGAAGGGAGTATACTATTCT
CAAAATAAGACCTTAAATTTGCAAAATTTAAAGGAAAACTACATTCAAGCCATTATGATT
TATTAATAGTAACAGCATGATGTATTTGCTAAAATGTTAGCATGTAGAGTTCATAGTGAA
TCACAGTTTGAAGGAGGGGCTTGGGCTGCCAGTGACAGGGAGACAGGGAGAGAGGACAAT
GCCTTCCGTTCATTTCCTTGCTGCCACGTGTGGAGTGAAAGGAGCTCTGTAATTTGATGG
ATTTCCTGTAATCCCAGATACTGACAGCGCCCAGCTTGTNCACACCTGAGCCCTTTACAC
AGCTTTATCAGCAGAGCTCCCCAGCAAAATAAAAAGGCAGATTGTCCATGGCTGCCCTGC
ACTGGAGCTGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTACAACAGAGGCCTCAACAAAATGTGCCCAAAGGGAGCTGAGGGAGGTGAGAGAAATA
CCACAGAGCCACAGGATAGTGAAGATGGACAGCTGAGAACTAAGGTGGATAGGTGAGCCT
GTGCTCCTGAAACAGCCTGCAGCCGAGCATAGAGTGATGGGAGAAGGAGCTTTAAAAGAA
AGATGAGAGTCTTACTGCACTGGGTAGAGACCACATTAGAGAATGAATGTATCACTTGTT
CTCAGATTTTGGTATATAAGATACAGGTACCCAATCCTAAAGATGCCCAGTGGAAGCCTT
TGGAGTAAAGACTCGAAGTGTATGTTTTGAACAACACCCACTGTACCCCATGATTCTGTG
ACTCATTACTGCATGTAAATATGATAAAGACCCAGACTGTCTCCCAGGCTTTTGCAGCTT
CTGTGTGGGTATGTGTTTGTGCTGGAGTCAAGATGCTGGGGGAAGGGAGTATACTATTCT
CAAAATAAGACCTTAAATTTGCAAAATTTAAAGGAAAACTACATTCAAGCCATTATGATT
TATTAATAGTAACAGCATGATGTATTTGCTAAAATGTTAGCATGTAGAGTTCATAGTGAA
TCACAGTTTGAAGGAGGGGCTTGGGCTGCCAGTGACAGGGAGACAGGGAGAGAGGACAAT
GCCTTCCGTTCATTTCCTTGCTGCCACGTGTGGAGTGAAAGGAGCTCTGTAATTTGATGG
ATTTCCTGTAATCCCAGATACTGACAGCGCCCAGCTTGTNCACACCTGAGCCCTTTACAC
AGCTTTATCAGCAGAGCTCCCCAGCAAAATAAAAAGGCAGATTGTCCATGGCTGCCCTGC
ACTGGAGCTGTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               698-817, - strand, RNAz p=0.625142

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               698-817, - strand, RNAz p=0.625142

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               248-836, gnl|bosTau2|chr20 (21690600-21690007)
               

               
               248-836, gnl|Hg17|chr5 (39538525-39537929)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               248-836, gnl|bosTau2|chr20 (21690600-21690007)
               

               
               248-836, gnl|Hg17|chr5 (39538525-39537929)

	248-836, gnl\|bosTau2\|chr20 (21690600-21690007)
	248-836, gnl\|Hg17\|chr5 (39538525-39537929)