Non-Coding RNA Search

Ss1.1-Lng1-LNG010110F02.5

Sequence:


               
               ATTTTGCCATAAATGTGCACACGGACCAAGATTTATTCTAAAGCCCCCTTGTTTCAGCCT
TGCTGCTGGTGAAGGTACTACTGTTTTCCAGCTCCTTCCTTCTCTCCCTGGCAGCGCGGC
AGCCGGGCTTGGAAAATGCGATAATGATGCCATAAGTACCCTAGTGCAAAAGTTGTTTTT
TGTTCCAAAACATTGCCAGTTCACGGCGTATAAAACTACCGCGGATGCTTCAGCCAGTTT
TTCTTTTTTTCCCCAAATAAGGCAAGCATTAATGAAGCAGCGGAGGGCCTGGGAAAATAT
GCTGTCATTCCTTAAAGTGAGATTTTTGTCTCTTCCCTAGGCCGGCCCAGAGACTTTTCA
GCTGAAGTATAAGTATGTGTCTGGCCAGAATTGGTGGAGTAGTAGGCTGTGCAATGATAA
CGTGTTTATTGCTGTTGTTACTGCTAATGACCGTCGATCAAAATAATGCTCCGCTTTCAC
GTTTTCCCACATGTTTGTCCAGGGATGAGAAGGATTTGAGTAAAGGGTGGAAGGGGTGTC
CCATCCTACAGCAAAGAACATAAGTCTCGCCACGTTCCCTGACCTGCCTCTCACTGACTT
AGGAGCCAGGAAGTTGGGTCGGGCAGGGCTCCAGCTCCCAGAGGCTGCATCCTTTGGTAC
CAGCTCCTCCTTGAAGCCCAGTGGCAGGCAAGGTGGTTAGTGTGGCCTGTGTGAGTGCTG
TTTACCAGGCCAGCAACCTCGTGGGTTGGCAGAAGGCCTGTTGTGAACGTGGGGAAAGTA
ACCTCCTGTTTAGAAGCAGGGACTATAATATCCAAACCATCGGGAAACATTCTAGGTGGA
ATCAGGGGCGGACATGAGAAGACGTCCATGGATCCGTTCTTATAAACAGTTGTATCCCAG
ATACTCACAGCGTGCAAAGGAAAGGACACGTGTCATTTTTTTTCCCCCTTAAAGGCCATT
TGGGACCATTGCATATTTTTGCCTAGTGCATTGGGAAAAGTACTTCCTGCCTCCAGACTC
ACACAACTCGCATATTATTCGTCTCCCACTACCTGGCCTCTCCCCTTGCAGTTAGCAGTT
ACGTTGTCTTTGTATCGATGGCGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTGCCATAAATGTGCACACGGACCAAGATTTATTCTAAAGCCCCCTTGTTTCAGCCT
TGCTGCTGGTGAAGGTACTACTGTTTTCCAGCTCCTTCCTTCTCTCCCTGGCAGCGCGGC
AGCCGGGCTTGGAAAATGCGATAATGATGCCATAAGTACCCTAGTGCAAAAGTTGTTTTT
TGTTCCAAAACATTGCCAGTTCACGGCGTATAAAACTACCGCGGATGCTTCAGCCAGTTT
TTCTTTTTTTCCCCAAATAAGGCAAGCATTAATGAAGCAGCGGAGGGCCTGGGAAAATAT
GCTGTCATTCCTTAAAGTGAGATTTTTGTCTCTTCCCTAGGCCGGCCCAGAGACTTTTCA
GCTGAAGTATAAGTATGTGTCTGGCCAGAATTGGTGGAGTAGTAGGCTGTGCAATGATAA
CGTGTTTATTGCTGTTGTTACTGCTAATGACCGTCGATCAAAATAATGCTCCGCTTTCAC
GTTTTCCCACATGTTTGTCCAGGGATGAGAAGGATTTGAGTAAAGGGTGGAAGGGGTGTC
CCATCCTACAGCAAAGAACATAAGTCTCGCCACGTTCCCTGACCTGCCTCTCACTGACTT
AGGAGCCAGGAAGTTGGGTCGGGCAGGGCTCCAGCTCCCAGAGGCTGCATCCTTTGGTAC
CAGCTCCTCCTTGAAGCCCAGTGGCAGGCAAGGTGGTTAGTGTGGCCTGTGTGAGTGCTG
TTTACCAGGCCAGCAACCTCGTGGGTTGGCAGAAGGCCTGTTGTGAACGTGGGGAAAGTA
ACCTCCTGTTTAGAAGCAGGGACTATAATATCCAAACCATCGGGAAACATTCTAGGTGGA
ATCAGGGGCGGACATGAGAAGACGTCCATGGATCCGTTCTTATAAACAGTTGTATCCCAG
ATACTCACAGCGTGCAAAGGAAAGGACACGTGTCATTTTTTTTCCCCCTTAAAGGCCATT
TGGGACCATTGCATATTTTTGCCTAGTGCATTGGGAAAAGTACTTCCTGCCTCCAGACTC
ACACAACTCGCATATTATTCGTCTCCCACTACCTGGCCTCTCCCCTTGCAGTTAGCAGTT
ACGTTGTCTTTGTATCGATGGCGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               719-838, - strand, RNAz p=0.988007

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               719-838, - strand, RNAz p=0.988007

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-558, gnl|bosTau2|chr26 (22389147-22389699)
               

               
               1-558, gnl|Hg17|chr10 (114814258-114814804)
               

               
               1-558, gnl|Mm7|chr19 (55758484-55759012)
               


               
               564-1093, gnl|bosTau2|chr26 (22389786-22390308)
               

               
               564-1093, gnl|Hg17|chr10 (114814808-114815294)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-558, gnl|bosTau2|chr26 (22389147-22389699)
               

               
               1-558, gnl|Hg17|chr10 (114814258-114814804)
               

               
               1-558, gnl|Mm7|chr19 (55758484-55759012)
               


               
               564-1093, gnl|bosTau2|chr26 (22389786-22390308)
               

               
               564-1093, gnl|Hg17|chr10 (114814808-114815294)

	1-558, gnl\|bosTau2\|chr26 (22389147-22389699)
	1-558, gnl\|Hg17\|chr10 (114814258-114814804)
	1-558, gnl\|Mm7\|chr19 (55758484-55759012)

	564-1093, gnl\|bosTau2\|chr26 (22389786-22390308)
	564-1093, gnl\|Hg17\|chr10 (114814808-114815294)