Non-Coding RNA Search

Ss1.1-LyN1-MLN01A020012.5

Sequence:


               
               TAAAAATAAATTCCCCTCCGTTCAAATCTGCAACCACATGGATTAAGGTTAAATCTATTT
ATTGAAACATATTGTTTAGAGCCTGTGTAACATAACTGGAGCCAACGCGGTGCTGTGGAG
AACCAGAGGATTTAGCCTGGTTATTAACTTGTCTTCTAGAGAATAGATTTAGCGTCCCAC
TTTTCTGCAATGGTTAATACACATCGAAAATTAATATTGAATATTTACTGCTCAGCAATC
ATCCTGCCCCAAATATGTACTTGTTCTCAGTTCACAAGCTCATCTAATGATCAGTACAAT
GAGAACCCTGGGGTTTTTCCAGTAGCCACCAATGGGGAACCATTTCCCTGGCGTGAGCTA
AGGCTCCCCACCAAGGTCATTCCCCTCCACTATGACCTTTTTGTCCACCCAAATCTTACC
TCCCTGGACTTCGTTGCATCTGAAAAGATTGAAGTCTTGGTCCGAGATACCACCCAATTT
ATCATCTTGCACAGCCATGGTCTTGAAATCATGAATGCCACTCTTCAGTCAGAGGAAGAT
CTGAGATACAAGAAATCAGGGGAAAAGCTAACTGTTTTGAGTTACCCTGCTCATCAGCAA
ATTGCACTACTGGTTCCAGAGAAACTTATGGCTGACCTGAGATACTCTGTGGCTATTGAC
TTCCAGGCCAAACTAGCTGATGGTTTTGAAGGGTTTTATAAAAGCACGTACAGAACTCTT
GGTGGTGAAACAAGAACAATAGCAGTAACGGATTTTGAGCCAACCCACGCACGGATGGCT
TTCCCTTGCTTTGATGAGCCATTGTTCAAAGCCAACTTTTCAATCAAGATAAGAAGAGAG
AGCAGACACATTGCCCTATCCTACATGCCAAAGGTTGAAAGGATCTGCTCCTCAACTCCA
AGTCTTCTCTCCAACTAAATGTTCATTTAAGGGCAGTTCTTTCCTGGCAGCTTTAATTAA
TACAATTTTTCACATGAATGATCATAAAAGGTTAAGACAATTGAACGTGAAGGAGGTCTC
TTGGAAGATCATTTTGAAACTACTGTAAAAATGAGTACGTACCTTGTAGCCCACATAGTT
CGTGATCTTGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAAAATAAATTCCCCTCCGTTCAAATCTGCAACCACATGGATTAAGGTTAAATCTATTT
ATTGAAACATATTGTTTAGAGCCTGTGTAACATAACTGGAGCCAACGCGGTGCTGTGGAG
AACCAGAGGATTTAGCCTGGTTATTAACTTGTCTTCTAGAGAATAGATTTAGCGTCCCAC
TTTTCTGCAATGGTTAATACACATCGAAAATTAATATTGAATATTTACTGCTCAGCAATC
ATCCTGCCCCAAATATGTACTTGTTCTCAGTTCACAAGCTCATCTAATGATCAGTACAAT
GAGAACCCTGGGGTTTTTCCAGTAGCCACCAATGGGGAACCATTTCCCTGGCGTGAGCTA
AGGCTCCCCACCAAGGTCATTCCCCTCCACTATGACCTTTTTGTCCACCCAAATCTTACC
TCCCTGGACTTCGTTGCATCTGAAAAGATTGAAGTCTTGGTCCGAGATACCACCCAATTT
ATCATCTTGCACAGCCATGGTCTTGAAATCATGAATGCCACTCTTCAGTCAGAGGAAGAT
CTGAGATACAAGAAATCAGGGGAAAAGCTAACTGTTTTGAGTTACCCTGCTCATCAGCAA
ATTGCACTACTGGTTCCAGAGAAACTTATGGCTGACCTGAGATACTCTGTGGCTATTGAC
TTCCAGGCCAAACTAGCTGATGGTTTTGAAGGGTTTTATAAAAGCACGTACAGAACTCTT
GGTGGTGAAACAAGAACAATAGCAGTAACGGATTTTGAGCCAACCCACGCACGGATGGCT
TTCCCTTGCTTTGATGAGCCATTGTTCAAAGCCAACTTTTCAATCAAGATAAGAAGAGAG
AGCAGACACATTGCCCTATCCTACATGCCAAAGGTTGAAAGGATCTGCTCCTCAACTCCA
AGTCTTCTCTCCAACTAAATGTTCATTTAAGGGCAGTTCTTTCCTGGCAGCTTTAATTAA
TACAATTTTTCACATGAATGATCATAAAAGGTTAAGACAATTGAACGTGAAGGAGGTCTC
TTGGAAGATCATTTTGAAACTACTGTAAAAATGAGTACGTACCTTGTAGCCCACATAGTT
CGTGATCTTGCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|19879272|gb|AAK37776.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|19879272|gb|AAK37776.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               278-437, - strand, RNAz p=0.953016

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               278-437, - strand, RNAz p=0.953016

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               46-734, gnl|bosTau2|chr7 (59759984-59760680)
               

               
               46-734, gnl|Hg17|chr5 (96241022-96241720)
               

               
               46-734, gnl|Mm7|chr17 (15816312-15815251)
               


               
               872-996, gnl|bosTau2|chr7 (59766766-59766897)
               

               
               872-996, gnl|Mm7|chr17 (15810929-15810787)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               46-734, gnl|bosTau2|chr7 (59759984-59760680)
               

               
               46-734, gnl|Hg17|chr5 (96241022-96241720)
               

               
               46-734, gnl|Mm7|chr17 (15816312-15815251)
               


               
               872-996, gnl|bosTau2|chr7 (59766766-59766897)
               

               
               872-996, gnl|Mm7|chr17 (15810929-15810787)

	46-734, gnl\|bosTau2\|chr7 (59759984-59760680)
	46-734, gnl\|Hg17\|chr5 (96241022-96241720)
	46-734, gnl\|Mm7\|chr17 (15816312-15815251)

	872-996, gnl\|bosTau2\|chr7 (59766766-59766897)
	872-996, gnl\|Mm7\|chr17 (15810929-15810787)