Non-Coding RNA Search

Ss1.1-LyN1-MLN01B030028.5

Sequence:


               
               ATATAAGATTTTTAAAATCTTAATGTTATTTTTTTCTTTTGTTCAGGTGATCTGATGGAA
GGTGAGCTCTATTCTGCACTCAAAGAAGAAGAAGCATCTGAATCTGTTTCTAGTACCAAT
TTCAGTGGTGAAATGCACTTCTATGAGCTTGTAGAAGACACAAAAGATGGCATCTGGCTG
GTTCAGGTGTTGGAAACAATGATAGAAGTAAAATTATTTTTACCAAAATAGTAGTCACCA
GCTGGTGATACTTTTGTGTACTTGTCTCTTGTTTCTTACTTATAATTCAGTTCCTGTAGG
GAGAATCCCAAGTCCCACCAAAGAACATGAAATTAATTAAAGAGTAGGGAAAGGAAAGCG
TTGGGGAAAGAGAGTTGACTATTTTGTTTAGAATCAGCAGAAGCAAATCCATTTTGGTTG
TTGGCTAGTCATTGAAGTAAGAAACACATATATATTCTTTTTATTTAGTGATTTGTGCTA
TTTCTTGCAGTTTTTGTTAACTCCAGTTTTTAATTCAGTGATCCAAATAATTTTTGTTTC
TAAAGAAAGAACCTGAAAGTAAAAGTAAAGGAATCCTTCAGAGTTTCTGCTGTGGTGCAG
TGGGATTGGCAGCATCTTTGTAGT------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------TGTTGGGAAAATAGCCAACTTTGTGACTAGAGAGGAAGAGCTGTTCAA
GGGAATGGTGGGGTGCTTATTACTTTGCTCATGAAATTGACGAGACTATAGTTTTACACC
CTAGCTCCTTCCTGTGCTATCAAAACTGAGATTTAATTAGCATATTAGAATTTTAGAGCT
ATGAAGGGCCTTAAAAATCATCTTTTGTGGAGTTCCTGTCGTGGCTCAGTGGTTAACGAA
TCCAACTAGGAACCATGAGGTTGCGGGTTCGGTCCCTGGCTTTGCTCAGTAGGTTAAGGA
TCCAGTGTTGCTGTGTCTCTGGCGTAGGGCAGTGGCTATAGCTCCGATTAGACCCCTAGC
CTGGGAACCTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATATAAGATTTTTAAAATCTTAATGTTATTTTTTTCTTTTGTTCAGGTGATCTGATGGAA
GGTGAGCTCTATTCTGCACTCAAAGAAGAAGAAGCATCTGAATCTGTTTCTAGTACCAAT
TTCAGTGGTGAAATGCACTTCTATGAGCTTGTAGAAGACACAAAAGATGGCATCTGGCTG
GTTCAGGTGTTGGAAACAATGATAGAAGTAAAATTATTTTTACCAAAATAGTAGTCACCA
GCTGGTGATACTTTTGTGTACTTGTCTCTTGTTTCTTACTTATAATTCAGTTCCTGTAGG
GAGAATCCCAAGTCCCACCAAAGAACATGAAATTAATTAAAGAGTAGGGAAAGGAAAGCG
TTGGGGAAAGAGAGTTGACTATTTTGTTTAGAATCAGCAGAAGCAAATCCATTTTGGTTG
TTGGCTAGTCATTGAAGTAAGAAACACATATATATTCTTTTTATTTAGTGATTTGTGCTA
TTTCTTGCAGTTTTTGTTAACTCCAGTTTTTAATTCAGTGATCCAAATAATTTTTGTTTC
TAAAGAAAGAACCTGAAAGTAAAAGTAAAGGAATCCTTCAGAGTTTCTGCTGTGGTGCAG
TGGGATTGGCAGCATCTTTGTAGT------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------TGTTGGGAAAATAGCCAACTTTGTGACTAGAGAGGAAGAGCTGTTCAA
GGGAATGGTGGGGTGCTTATTACTTTGCTCATGAAATTGACGAGACTATAGTTTTACACC
CTAGCTCCTTCCTGTGCTATCAAAACTGAGATTTAATTAGCATATTAGAATTTTAGAGCT
ATGAAGGGCCTTAAAAATCATCTTTTGTGGAGTTCCTGTCGTGGCTCAGTGGTTAACGAA
TCCAACTAGGAACCATGAGGTTGCGGGTTCGGTCCCTGGCTTTGCTCAGTAGGTTAAGGA
TCCAGTGTTGCTGTGTCTCTGGCGTAGGGCAGTGGCTATAGCTCCGATTAGACCCCTAGC
CTGGGAACCTCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               119-219, - strand, RNAz p=0.642323

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               119-219, - strand, RNAz p=0.642323

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-578, gnl|bosTau2|chr11 (35317118-35316554)
               

               
               3-578, gnl|Hg17|chr2 (86759297-86758687)
               

               
               3-578, gnl|Mm7|chr6 (71514717-71515494)
               


               
               624-814, gnl|bosTau2|chr11 (35316553-35316365)
               

               
               624-814, gnl|Hg17|chr2 (86758686-86758509)
               

               
               624-814, gnl|Mm7|chr6 (71515495-71515702)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-578, gnl|bosTau2|chr11 (35317118-35316554)
               

               
               3-578, gnl|Hg17|chr2 (86759297-86758687)
               

               
               3-578, gnl|Mm7|chr6 (71514717-71515494)
               


               
               624-814, gnl|bosTau2|chr11 (35316553-35316365)
               

               
               624-814, gnl|Hg17|chr2 (86758686-86758509)
               

               
               624-814, gnl|Mm7|chr6 (71515495-71515702)

	3-578, gnl\|bosTau2\|chr11 (35317118-35316554)
	3-578, gnl\|Hg17\|chr2 (86759297-86758687)
	3-578, gnl\|Mm7\|chr6 (71514717-71515494)

	624-814, gnl\|bosTau2\|chr11 (35316553-35316365)
	624-814, gnl\|Hg17\|chr2 (86758686-86758509)
	624-814, gnl\|Mm7\|chr6 (71515495-71515702)