Non-Coding RNA Search

Ss1.1-LyN1-MLN01B040012.5

Sequence:


               
               AAGCCCCGGCTTGGGGAAGACTGCGCGCTCGGAGCCGGGGCCGCCGAGCCGGGGGCCGGG
AACACGGGGAAGCAGACTCTTGAGTTCACAGCTGGCCTGTGGATTTCACCTCTCATCAAG
GAGCTCCTCCTCGAACAGGTGGCGTTTTTCTGAAGTTGTTCATTGAGACTTCCTAGCATT
CCTGCAGCTATAATAGGTGAGGCTGCAGCGCGCCACCCGGACATGGCAGCATGACAGCCC
CGGACAGCGCTGCCCGACGCCCGGAGAAAGGAGCCCCCGAGCAGCGGCCACTGCCTGCCC
AGGCTGCCTGAGCCTCCTTCGCACGCCTTCCCCGCCGCTCGCCGGGCTCGCCTTTACCGT
TAACCCCGTGGACTCCTAACTCCTTCCGCCTGAAACATCAATATGTGTCATGTCATTGTC
ACCTGTCGCTCGATGCTCTGGACCCTCCTGAGTATTGTGGTGGCTTTTGCCGAACTCATC
GCCTTCATGAGCGCAGACTGGCTGATTGGAAAAGCCAAGACCCGCAGCAGCGCTGAGCCC
GGAGAGCAGGGTGGGGGCTCCCCGGAGCCCTATCACCCCACGCTGGGCATCTATGCCCGC
TGCATCCGGAACCCCGGCGTGCAGCACTTCCAGCGGGAGACGCTGTGCGGGCCCTACGCC
GAGACCTTCGGGGAGATTGCCAGTGGCTTCTGGCAGGCCACCGCTATTTTCTTAGCCATG
GGCATCTTCATTCTCTGCATGGTGGCCCTGGTGTCCGTCTTCACCATGTGCGTGCAGAGC
ATCATGAAGAAAAGTATTTTCAACGTCTGCGGGCTGCTGCAAGGAATTGCAGGCCTGTTC
CTCATCCTCGGCCTGATCCTCTACCCCGCTGGCTGGGGCTGCCAGAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGCCCCGGCTTGGGGAAGACTGCGCGCTCGGAGCCGGGGCCGCCGAGCCGGGGGCCGGG
AACACGGGGAAGCAGACTCTTGAGTTCACAGCTGGCCTGTGGATTTCACCTCTCATCAAG
GAGCTCCTCCTCGAACAGGTGGCGTTTTTCTGAAGTTGTTCATTGAGACTTCCTAGCATT
CCTGCAGCTATAATAGGTGAGGCTGCAGCGCGCCACCCGGACATGGCAGCATGACAGCCC
CGGACAGCGCTGCCCGACGCCCGGAGAAAGGAGCCCCCGAGCAGCGGCCACTGCCTGCCC
AGGCTGCCTGAGCCTCCTTCGCACGCCTTCCCCGCCGCTCGCCGGGCTCGCCTTTACCGT
TAACCCCGTGGACTCCTAACTCCTTCCGCCTGAAACATCAATATGTGTCATGTCATTGTC
ACCTGTCGCTCGATGCTCTGGACCCTCCTGAGTATTGTGGTGGCTTTTGCCGAACTCATC
GCCTTCATGAGCGCAGACTGGCTGATTGGAAAAGCCAAGACCCGCAGCAGCGCTGAGCCC
GGAGAGCAGGGTGGGGGCTCCCCGGAGCCCTATCACCCCACGCTGGGCATCTATGCCCGC
TGCATCCGGAACCCCGGCGTGCAGCACTTCCAGCGGGAGACGCTGTGCGGGCCCTACGCC
GAGACCTTCGGGGAGATTGCCAGTGGCTTCTGGCAGGCCACCGCTATTTTCTTAGCCATG
GGCATCTTCATTCTCTGCATGGTGGCCCTGGTGTCCGTCTTCACCATGTGCGTGCAGAGC
ATCATGAAGAAAAGTATTTTCAACGTCTGCGGGCTGCTGCAAGGAATTGCAGGCCTGTTC
CTCATCCTCGGCCTGATCCTCTACCCCGCTGGCTGGGGCTGCCAGAAG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|32329206|gb|AAP74733.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|32329206|gb|AAP74733.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               537-776, + strand, RNAz p=0.940037

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               537-776, + strand, RNAz p=0.940037

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               67-236, gnl|bosTau2|chr15 (317856-317691)
               


               
               306-833, gnl|bosTau2|chr10 (3627919-3627390)
               

               
               306-833, gnl|Hg17|chr5 (77841896-77841362)
               

               
               306-833, gnl|Mm7|chr13 (91237117-91237629)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               67-236, gnl|bosTau2|chr15 (317856-317691)
               


               
               306-833, gnl|bosTau2|chr10 (3627919-3627390)
               

               
               306-833, gnl|Hg17|chr5 (77841896-77841362)
               

               
               306-833, gnl|Mm7|chr13 (91237117-91237629)

	67-236, gnl\|bosTau2\|chr15 (317856-317691)

	306-833, gnl\|bosTau2\|chr10 (3627919-3627390)
	306-833, gnl\|Hg17\|chr5 (77841896-77841362)
	306-833, gnl\|Mm7\|chr13 (91237117-91237629)