Non-Coding RNA Search

Ss1.1-LyN1-MLN01B060079.5

Sequence:


               
               CCCGTTCGCCCCTCCCCCGCGGCTCGGGAGCGGAGCCTGCGAGACGGAGAAACTGGGGCA
GAAGTGAAGATGGCGGCGGCGGTGCTGGCGGCGGCGGCGGCGGCTTCTTGCCAGTGACGC
GCGGTGCGGGCTCATCTCCCTCCCCACCTCCTTATTCCGGACCCCGTCCGCCGCCGGGAC
CACACCAGCCCCGCAGCCCGCAGCCCGCCTCGCTCCTCCCTCCCCAGTCGGCCCTTCTCC
CGACGCCCGGCTGCCGCTGGCGGCGGCGCGCCCCGGGTCCCGGCCTCGCACTCTTGCGCG
CTGTCGCCGGGGGAGCCGGTGGCGTGTTGATCCGCCCTCCTGCCCGGACCGCCGCGCCGC
GGACACACGCTCGGCAGGGAGGCGGCAGCGGCCCCTGCGCATTTGCTTCTCTCCTTTTGG
GGACTGGGAGGTGGCGGCGGCGGCGGCTGTGGGTTTTGGGGAGGGGAAGGGATCCGGGGG
GTGCATAGCGGGAGGGGGCAGTCCTCCGGAGGAGGACGAGAAGGAAGCACCATGACGTCC
ATCCATTTCGTGGTTCACCCGCTGCCGGGCACCGAGGACCAGCTCAATGACAGGTTACGG
GAAGTTTCACAGAGATTGAACAAATATAATTTAAACAGCCATCCCCCTTTGAATGTATTG
GAACAGGCGACTATAAAACAATGTGTGGTGGGACCAAATCATGCTGCCTTTCTTCTTGAG
GATGGTAGAGTTTGTAGGATCGGTTTTTCAGTACAGCCAGACCGATTGGAATTGGGGAAA
CCTGACAATAATGATGGGTCTAAGTTGAATAGCAACTCCGGGGCAGGGAGGACATCGAGA
CCTGGTAGGACGAGTGACTCCCCGTGGTTTCTCTCAGGTTCTGAGACTCTGGGCCGGCTG
GCAGGCAACACCCTGNGAAGCCGCTGGAGTTCTGGAGTGGGGGGAAGTGGAGGAGGATCC
TCTGGTCGATCGTCAGCTGGAGCTCGAGATTCCCGCCGGCAGACTCGAGTAATTCGAACT
GGACGGGATCGAGGGTCTGGACTTTTGGGCAGCCAACCCCAGCCAGTTATTCCAGCATCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCGTTCGCCCCTCCCCCGCGGCTCGGGAGCGGAGCCTGCGAGACGGAGAAACTGGGGCA
GAAGTGAAGATGGCGGCGGCGGTGCTGGCGGCGGCGGCGGCGGCTTCTTGCCAGTGACGC
GCGGTGCGGGCTCATCTCCCTCCCCACCTCCTTATTCCGGACCCCGTCCGCCGCCGGGAC
CACACCAGCCCCGCAGCCCGCAGCCCGCCTCGCTCCTCCCTCCCCAGTCGGCCCTTCTCC
CGACGCCCGGCTGCCGCTGGCGGCGGCGCGCCCCGGGTCCCGGCCTCGCACTCTTGCGCG
CTGTCGCCGGGGGAGCCGGTGGCGTGTTGATCCGCCCTCCTGCCCGGACCGCCGCGCCGC
GGACACACGCTCGGCAGGGAGGCGGCAGCGGCCCCTGCGCATTTGCTTCTCTCCTTTTGG
GGACTGGGAGGTGGCGGCGGCGGCGGCTGTGGGTTTTGGGGAGGGGAAGGGATCCGGGGG
GTGCATAGCGGGAGGGGGCAGTCCTCCGGAGGAGGACGAGAAGGAAGCACCATGACGTCC
ATCCATTTCGTGGTTCACCCGCTGCCGGGCACCGAGGACCAGCTCAATGACAGGTTACGG
GAAGTTTCACAGAGATTGAACAAATATAATTTAAACAGCCATCCCCCTTTGAATGTATTG
GAACAGGCGACTATAAAACAATGTGTGGTGGGACCAAATCATGCTGCCTTTCTTCTTGAG
GATGGTAGAGTTTGTAGGATCGGTTTTTCAGTACAGCCAGACCGATTGGAATTGGGGAAA
CCTGACAATAATGATGGGTCTAAGTTGAATAGCAACTCCGGGGCAGGGAGGACATCGAGA
CCTGGTAGGACGAGTGACTCCCCGTGGTTTCTCTCAGGTTCTGAGACTCTGGGCCGGCTG
GCAGGCAACACCCTGNGAAGCCGCTGGAGTTCTGGAGTGGGGGGAAGTGGAGGAGGATCC
TCTGGTCGATCGTCAGCTGGAGCTCGAGATTCCCGCCGGCAGACTCGAGTAATTCGAACT
GGACGGGATCGAGGGTCTGGACTTTTGGGCAGCCAACCCCAGCCAGTTATTCCAGCATCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61875198|ref|XP_586924.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61875198|ref|XP_586924.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               963-1080, + strand, RNAz p=0.890077

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               963-1080, + strand, RNAz p=0.890077

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

Help | Less info


               
               917-1080, gnl|bosTau2|chr14 (13991220-13991383)
               

               
               917-1080, gnl|canFam2|chr13 (6984922-6985091)
               

               
               917-1080, gnl|danRer3|chrNA (100870020-100869851)
               

               
               917-1080, gnl|dasNov1|scaffold_1578 (70840-70671)
               

               
               917-1080, gnl|echTel1|scaffold_300701 (1658-1489)
               

               
               917-1080, gnl|fr1|chrUn (12332020-12332167)
               

               
               917-1080, gnl|galGal2|chr2 (127934087-127933921)
               

               
               917-1080, gnl|hg17|chr8 (103428302-103428471)
               

               
               917-1080, gnl|Hg17|chr8 (103428497-103428334)
               

               
               917-1080, gnl|loxAfr1|scaffold_40327 (4319-4150)
               

               
               917-1080, gnl|mm7|chr15 (38152457-38152626)
               

               
               917-1080, gnl|Mm7|chr15 (38152652-38152489)
               

               
               917-1080, gnl|monDom2|scaffold_3 (60821756-60821589)
               

               
               917-1080, gnl|oryCun1|scaffold_178791 (58059-57906)
               

               
               917-1080, gnl|panTro1|chr7 (105799900-105800069)
               

               
               917-1080, gnl|rheMac2|chr8 (104847818-104847987)
               

               
               917-1080, gnl|rn3|chr7 (73555897-73556066)
               

               
               917-1080, gnl|tetNig1|chr8 (9648008-9647854)
               

               
               917-1080, gnl|xenTro1|scaffold_3 (5635725-5635556)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               917-1080, gnl|bosTau2|chr14 (13991220-13991383)
               

               
               917-1080, gnl|canFam2|chr13 (6984922-6985091)
               

               
               917-1080, gnl|danRer3|chrNA (100870020-100869851)
               

               
               917-1080, gnl|dasNov1|scaffold_1578 (70840-70671)
               

               
               917-1080, gnl|echTel1|scaffold_300701 (1658-1489)
               

               
               917-1080, gnl|fr1|chrUn (12332020-12332167)
               

               
               917-1080, gnl|galGal2|chr2 (127934087-127933921)
               

               
               917-1080, gnl|hg17|chr8 (103428302-103428471)
               

               
               917-1080, gnl|Hg17|chr8 (103428497-103428334)
               

               
               917-1080, gnl|loxAfr1|scaffold_40327 (4319-4150)
               

               
               917-1080, gnl|mm7|chr15 (38152457-38152626)
               

               
               917-1080, gnl|Mm7|chr15 (38152652-38152489)
               

               
               917-1080, gnl|monDom2|scaffold_3 (60821756-60821589)
               

               
               917-1080, gnl|oryCun1|scaffold_178791 (58059-57906)
               

               
               917-1080, gnl|panTro1|chr7 (105799900-105800069)
               

               
               917-1080, gnl|rheMac2|chr8 (104847818-104847987)
               

               
               917-1080, gnl|rn3|chr7 (73555897-73556066)
               

               
               917-1080, gnl|tetNig1|chr8 (9648008-9647854)
               

               
               917-1080, gnl|xenTro1|scaffold_3 (5635725-5635556)

	917-1080, gnl\|bosTau2\|chr14 (13991220-13991383)
	917-1080, gnl\|canFam2\|chr13 (6984922-6985091)
	917-1080, gnl\|danRer3\|chrNA (100870020-100869851)
	917-1080, gnl\|dasNov1\|scaffold_1578 (70840-70671)
	917-1080, gnl\|echTel1\|scaffold_300701 (1658-1489)
	917-1080, gnl\|fr1\|chrUn (12332020-12332167)
	917-1080, gnl\|galGal2\|chr2 (127934087-127933921)
	917-1080, gnl\|hg17\|chr8 (103428302-103428471)
	917-1080, gnl\|Hg17\|chr8 (103428497-103428334)
	917-1080, gnl\|loxAfr1\|scaffold_40327 (4319-4150)
	917-1080, gnl\|mm7\|chr15 (38152457-38152626)
	917-1080, gnl\|Mm7\|chr15 (38152652-38152489)
	917-1080, gnl\|monDom2\|scaffold_3 (60821756-60821589)
	917-1080, gnl\|oryCun1\|scaffold_178791 (58059-57906)
	917-1080, gnl\|panTro1\|chr7 (105799900-105800069)
	917-1080, gnl\|rheMac2\|chr8 (104847818-104847987)
	917-1080, gnl\|rn3\|chr7 (73555897-73556066)
	917-1080, gnl\|tetNig1\|chr8 (9648008-9647854)
	917-1080, gnl\|xenTro1\|scaffold_3 (5635725-5635556)