Non-Coding RNA Search

Ss1.1-LyN1-MLN01B080063.5

Sequence:


               
               TCTACCCTTCTTCCTCAGTAACCAAAAGCCTGACTTCTTTTTAGGGTATAGTAATGTGCC
AAGCTGAAAGACTCTATTTCCCAGCTCTTTTTCACCTCGATATGGGCTAGTGACTTAAGC
TTTAGTCAGTGAAAGGTAAACTGTTACGTGTGGGGCTTATGGGAAGGTTCCAGGGACAAT
TTGTGCAGACAATGCATCCCTTTTGCTTTTTCTCTGTCTTACCTATTACTTGGAACATGG
ACACAATGGCTGAAATCCAGCAGCTACCTTGGATCATGAGGTAACTGTGATAATGGCAGC
CATGCTCCAGGTAGGTGAAGCAAGAAGAAAGGAGGAGCCTGGATCCCTGATGACCATGGA
GCCATGATACTAGCCATGGACAGCTTACCTCCATATTTCTTTCTTACTGTTTAAGCCAAA
GTTACTTTGGATTTCCCATTTTAAGCAGCCAAACCCAAAGTACTGCTACCCTGTTGTTTG
AAGGCCTCACAGTATGTCCTCCACACAATCTTGAAGGTGAATTGCACATAGTGGGTGCTC
TGTTAAGTGTCTGACAAAGTTAAATGCCCAATGGCATTGAGGTGGAGCGTTTAAAGGCTC
CAGCTCCTCTGACCTCTGCCCTTCCTGCCTAGATTAAATTACTCATAGAGGTCTTGGTTT
TCCTATCCCAGCCACCAGGAAGGTATTTCGCAGTGTAGGGCTTTAGGGCTATAGGCTCAA
ATGTTTTGATAAGGGAGTGGGTCTTTGAGATTCTAACTGCATGCATCCATTATTTCAAAT
GAAAATTGAAGGGCTGGGCACTTTTCTGAATCTACTCAAGAAACTGGAAGTGGTGGTTTG
AGTGATGTCAGAAAAGACCACCATGGAGTCTTGTGCTATCATTTGGAGGCAGTACTTTCC
ACAGTGCCTGCCAGGAATTTGATGTCAGGAGAGTCTTTTGAAAGCAAATGTTAGGGAGCC
TTGATTGCCAGCTATTGACAAGGGGGTCTGCCTTCTCAGTGGCAGCCTCAGAGGTGGTCT
TGGCCAGACCAACCTGCCCCTGACTCATGCTGAGCTCTGTCGGCCAGGCCGACACACCCC
TCTTTGGGGCCCAGTACAACATGTTGGTTTCCTGGAAGAATTTAGGCCAAAACTTTGCTG
CTAAGAAAATGATACATATATTTTTTTGCAAGTATGGCCTAATGAGAGTGTGTTTAAAAA
AACTCTCTCTCCCTCAAAAGTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTACCCTTCTTCCTCAGTAACCAAAAGCCTGACTTCTTTTTAGGGTATAGTAATGTGCC
AAGCTGAAAGACTCTATTTCCCAGCTCTTTTTCACCTCGATATGGGCTAGTGACTTAAGC
TTTAGTCAGTGAAAGGTAAACTGTTACGTGTGGGGCTTATGGGAAGGTTCCAGGGACAAT
TTGTGCAGACAATGCATCCCTTTTGCTTTTTCTCTGTCTTACCTATTACTTGGAACATGG
ACACAATGGCTGAAATCCAGCAGCTACCTTGGATCATGAGGTAACTGTGATAATGGCAGC
CATGCTCCAGGTAGGTGAAGCAAGAAGAAAGGAGGAGCCTGGATCCCTGATGACCATGGA
GCCATGATACTAGCCATGGACAGCTTACCTCCATATTTCTTTCTTACTGTTTAAGCCAAA
GTTACTTTGGATTTCCCATTTTAAGCAGCCAAACCCAAAGTACTGCTACCCTGTTGTTTG
AAGGCCTCACAGTATGTCCTCCACACAATCTTGAAGGTGAATTGCACATAGTGGGTGCTC
TGTTAAGTGTCTGACAAAGTTAAATGCCCAATGGCATTGAGGTGGAGCGTTTAAAGGCTC
CAGCTCCTCTGACCTCTGCCCTTCCTGCCTAGATTAAATTACTCATAGAGGTCTTGGTTT
TCCTATCCCAGCCACCAGGAAGGTATTTCGCAGTGTAGGGCTTTAGGGCTATAGGCTCAA
ATGTTTTGATAAGGGAGTGGGTCTTTGAGATTCTAACTGCATGCATCCATTATTTCAAAT
GAAAATTGAAGGGCTGGGCACTTTTCTGAATCTACTCAAGAAACTGGAAGTGGTGGTTTG
AGTGATGTCAGAAAAGACCACCATGGAGTCTTGTGCTATCATTTGGAGGCAGTACTTTCC
ACAGTGCCTGCCAGGAATTTGATGTCAGGAGAGTCTTTTGAAAGCAAATGTTAGGGAGCC
TTGATTGCCAGCTATTGACAAGGGGGTCTGCCTTCTCAGTGGCAGCCTCAGAGGTGGTCT
TGGCCAGACCAACCTGCCCCTGACTCATGCTGAGCTCTGTCGGCCAGGCCGACACACCCC
TCTTTGGGGCCCAGTACAACATGTTGGTTTCCTGGAAGAATTTAGGCCAAAACTTTGCTG
CTAAGAAAATGATACATATATTTTTTTGCAAGTATGGCCTAATGAGAGTGTGTTTAAAAA
AACTCTCTCTCCCTCAAAAGTGAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               212-368, - strand, RNAz p=0.919413
               

               
               990-1109, - strand, RNAz p=0.663324

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               212-368, - strand, RNAz p=0.919413
               

               
               990-1109, - strand, RNAz p=0.663324

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               2-422, gnl|bosTau2|chr10 (34987319-34986902)
               

               
               2-422, gnl|canFam2|chr30 (25569215-25569801)
               

               
               2-422, gnl|dasNov1|scaffold_612 (2983-3573)
               

               
               2-422, gnl|echTel1|scaffold_325000 (144402-143836)
               

               
               2-422, gnl|hg17|chr15 (55480974-55481554)
               

               
               2-422, gnl|Hg17|chr15 (55481261-55482078)
               

               
               2-422, gnl|loxAfr1|scaffold_3563 (89169-88549)
               

               
               2-422, gnl|oryCun1|scaffold_172994 (40395-40943)
               

               
               2-422, gnl|panTro1|chr16 (55830463-55831042)
               

               
               2-422, gnl|rheMac2|chr7 (35735899-35736465)
               


               
               463-1199, gnl|bosTau2|chr10 (34986895-34986166)
               

               
               463-1199, gnl|Hg17|chr15 (55482099-55482853)
               

               
               463-1199, gnl|Mm7|chr9 (71789482-71788845)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-422, gnl|bosTau2|chr10 (34987319-34986902)
               

               
               2-422, gnl|canFam2|chr30 (25569215-25569801)
               

               
               2-422, gnl|dasNov1|scaffold_612 (2983-3573)
               

               
               2-422, gnl|echTel1|scaffold_325000 (144402-143836)
               

               
               2-422, gnl|hg17|chr15 (55480974-55481554)
               

               
               2-422, gnl|Hg17|chr15 (55481261-55482078)
               

               
               2-422, gnl|loxAfr1|scaffold_3563 (89169-88549)
               

               
               2-422, gnl|oryCun1|scaffold_172994 (40395-40943)
               

               
               2-422, gnl|panTro1|chr16 (55830463-55831042)
               

               
               2-422, gnl|rheMac2|chr7 (35735899-35736465)
               


               
               463-1199, gnl|bosTau2|chr10 (34986895-34986166)
               

               
               463-1199, gnl|Hg17|chr15 (55482099-55482853)
               

               
               463-1199, gnl|Mm7|chr9 (71789482-71788845)

	212-368, - strand, RNAz p=0.919413
	990-1109, - strand, RNAz p=0.663324

	2-422, gnl\|bosTau2\|chr10 (34987319-34986902)
	2-422, gnl\|canFam2\|chr30 (25569215-25569801)
	2-422, gnl\|dasNov1\|scaffold_612 (2983-3573)
	2-422, gnl\|echTel1\|scaffold_325000 (144402-143836)
	2-422, gnl\|hg17\|chr15 (55480974-55481554)
	2-422, gnl\|Hg17\|chr15 (55481261-55482078)
	2-422, gnl\|loxAfr1\|scaffold_3563 (89169-88549)
	2-422, gnl\|oryCun1\|scaffold_172994 (40395-40943)
	2-422, gnl\|panTro1\|chr16 (55830463-55831042)
	2-422, gnl\|rheMac2\|chr7 (35735899-35736465)

	463-1199, gnl\|bosTau2\|chr10 (34986895-34986166)
	463-1199, gnl\|Hg17\|chr15 (55482099-55482853)
	463-1199, gnl\|Mm7\|chr9 (71789482-71788845)