Non-Coding RNA Search

Ss1.1-LyN1-MLN01B110099.5

Sequence:


               
               TCAGGGGGCAGGGGTGGCTCAAAGAAGGTGTCCAGATGTCCTTTAAGAAAACCCAAGGGC
ACAGTGACGATGACGTGATGCGCTGGGAAGCAGCCTCCATCCTCACACTCCACCAGCACT
GGAAACGCCTCCCCAGGAGCAGAGGCTTCCTGGAAGGACCCGTTCCAGCGAATGGTCTTC
ACGGGCTTGTCGAAAACCATCACGTCCGTGGGCAAGGAGGCCGCCATGCGGTCCGTGAGT
CCTTGGTAGCCCCCAGGAAAGGTGCAGTCCAGCCCAGGCAGCACTGTGTACTCTCCAAAA
GGCGCGAGGGCCACCAGGTCCATGCTGTGGGTACCACTGACACAGCACTCCACGTTGAAG
AGGTTGTTCAGGATGGCCAGCTTGAGCATCTTGGTCCCCTCACCCTCTGCCCAGCTGGCC
ACGTGCTCCCGGATCTGCTTCTTGAGGTACTCCCCAACGCTGGGCGCCGGGGCCTCGGCC
GAGTGCAGGAACTCCCTGGTCTGGTCTATGAGGCTGTAGAACAGACTGGACATCTCCGCC
ACCAGCTCAAGGCTCACGCTTCCCCCGGAGCTGGTGTAGGTCACAGAAGGCAGGCCCACG
TGACCCCCGGTCTCCACCAGCTGGTTCTCCTCGGACAACTCCTTCTCCCCCAGCAGCCCA
TACCTGGCAGCCAGCTGGAAGACGGGGTTGCTCTGGGAGGGCCCATGGATCCAGTGAGCA
CCTACCTCCACCACACCACCGAAGCTGCGCTCCGAGCGGATGCGGCCACCGGCACGGGCT
GTGGCCTCCAGAACCCGCAGGGACGGCAAGGCGGAGCAGCAGCAGAGCCTCTGCGCCGCT
CCCAGCCCGGCGATGCCGCCGCCCACCACCAACACCCGCGGACCGCGGCCTGGGGCCTCT
GCCTGATGGCCACTCGACTCCATCGCGCCGTCCCGGGGAGTTCCCGCGCTGCCCAGCCGC
TCCGACGTGCCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAGGGGGCAGGGGTGGCTCAAAGAAGGTGTCCAGATGTCCTTTAAGAAAACCCAAGGGC
ACAGTGACGATGACGTGATGCGCTGGGAAGCAGCCTCCATCCTCACACTCCACCAGCACT
GGAAACGCCTCCCCAGGAGCAGAGGCTTCCTGGAAGGACCCGTTCCAGCGAATGGTCTTC
ACGGGCTTGTCGAAAACCATCACGTCCGTGGGCAAGGAGGCCGCCATGCGGTCCGTGAGT
CCTTGGTAGCCCCCAGGAAAGGTGCAGTCCAGCCCAGGCAGCACTGTGTACTCTCCAAAA
GGCGCGAGGGCCACCAGGTCCATGCTGTGGGTACCACTGACACAGCACTCCACGTTGAAG
AGGTTGTTCAGGATGGCCAGCTTGAGCATCTTGGTCCCCTCACCCTCTGCCCAGCTGGCC
ACGTGCTCCCGGATCTGCTTCTTGAGGTACTCCCCAACGCTGGGCGCCGGGGCCTCGGCC
GAGTGCAGGAACTCCCTGGTCTGGTCTATGAGGCTGTAGAACAGACTGGACATCTCCGCC
ACCAGCTCAAGGCTCACGCTTCCCCCGGAGCTGGTGTAGGTCACAGAAGGCAGGCCCACG
TGACCCCCGGTCTCCACCAGCTGGTTCTCCTCGGACAACTCCTTCTCCCCCAGCAGCCCA
TACCTGGCAGCCAGCTGGAAGACGGGGTTGCTCTGGGAGGGCCCATGGATCCAGTGAGCA
CCTACCTCCACCACACCACCGAAGCTGCGCTCCGAGCGGATGCGGCCACCGGCACGGGCT
GTGGCCTCCAGAACCCGCAGGGACGGCAAGGCGGAGCAGCAGCAGAGCCTCTGCGCCGCT
CCCAGCCCGGCGATGCCGCCGCCCACCACCAACACCCGCGGACCGCGGCCTGGGGCCTCT
GCCTGATGGCCACTCGACTCCATCGCGCCGTCCCGGGGAGTTCCCGCGCTGCCCAGCCGC
TCCGACGTGCCG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|45439832|gb|AAS64375.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|45439832|gb|AAS64375.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               130-740, - strand, RNAz p=0.856044

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               130-740, - strand, RNAz p=0.856044

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of AY541524, -

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of AY541524, -

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               51-253, gnl|bosTau2|chr26 (35023786-35023988)
               

               
               51-253, gnl|Hg17|chr10 (135084046-135083844)
               

               
               51-253, gnl|Mm7|chr7 (136541496-136541294)
               


               
               254-740, gnl|bosTau2|chr26 (35024633-35025119)
               

               
               254-740, gnl|Hg17|chr10 (135082869-135082383)
               

               
               254-740, gnl|Mm7|chr7 (136540601-136540112)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               51-253, gnl|bosTau2|chr26 (35023786-35023988)
               

               
               51-253, gnl|Hg17|chr10 (135084046-135083844)
               

               
               51-253, gnl|Mm7|chr7 (136541496-136541294)
               


               
               254-740, gnl|bosTau2|chr26 (35024633-35025119)
               

               
               254-740, gnl|Hg17|chr10 (135082869-135082383)
               

               
               254-740, gnl|Mm7|chr7 (136540601-136540112)

	51-253, gnl\|bosTau2\|chr26 (35023786-35023988)
	51-253, gnl\|Hg17\|chr10 (135084046-135083844)
	51-253, gnl\|Mm7\|chr7 (136541496-136541294)

	254-740, gnl\|bosTau2\|chr26 (35024633-35025119)
	254-740, gnl\|Hg17\|chr10 (135082869-135082383)
	254-740, gnl\|Mm7\|chr7 (136540601-136540112)