Non-Coding RNA Search

Ss1.1-LyN1-MLN01D030075.5

Sequence:


               
               CTTGAAGCCTTGCATCTATTTCCATTTCCCCAGGACCGAAATCTTAAAACAGAAAAGCTA
CTTCCCCTTAGCTTTCAAAACAAAAGTAGGGCTTGTAAATCTGAACTCAACTGTTGCATA
CTGCTAGAGGGAATGACTTTGATACTAGGTACGATTTTTGGTGAGAATTTCTTTTTTAAA
AATTCTGTTAGAACTTGAACAAAAAAAAAATATGTATGACTGATACACTTTGCTATACAC
CTGAAACTAACACAATGTTCTAAGTTACCTATACTCTAATAAATTTAATTTTTTTGAAGA
GGAAAGCCCAGAACATTAATCACTGTGCATGTTCCATAGCAAAAGGCTGAGAAATTTAAA
CCAAGTCTGTTAAGACATGTATAAGCTGAGTATGTTGATTTCTGTGGTAGATAAAGCAGT
GCTGTGTCCGAAGGCTGTGTTACTATTTTTCTTAGATCCCCTTGGAACTGGATATGTTGT
TTAATGGCAGAAGACATTTCTATGTTAGGCCAGTCGTAGTGCCCCTCAAAACTTTGTGTT
TAGGGTATCAGAGTCATGGACTAAATTAAGTGATTATCTGCCTATTAAAAAAAGCTGAAG
TCATTTGAAGAAAACTGAACAGGTGCAGGAAGATAAGCCATTTGAAAATGTAAAGTGCGT
CTGAGAAAGCCTTTTGAAAGTCAGAGGGTTTTATGGATTTCTTTTGTCATTAATAATTGA
ACTTAGTGTAAAAGATATTTTAGCTGGATAGACTTACAAGGCTGGTAAAAGTACAGGAAT
TTTTTTTTTATAGATTGTTTTTGCATTGCCTTTGATGTGTCTCTATATCTTGAGCTAATT
AATGATTGAAAGAAAAATCTGTGGAACTCAGTGTTTTTATGGCTTTTGGGATGGGGTGGG
GTCAAAGATGACTGTGTGTTGGGGGCAGAGGGAGTTCTTTTGAAAGGC------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------TATGCTTCAGGTGGGGCCCTAAAAAGCAAAAAAAAG
AAAAAAAAAAGGCAGACTGAGATCGTGGGCCACTTAGCCTGTTTGCTTCTGCTTTGGCCA
CAGGTGCAGGCAGTCTGTTTTACAAAGAGTTAAAGTTCTGCTTCTAAACAGATGCCTTTC
CAGTGTTTTTTCCTGCTGCTCTGAAAAACCATATGTGGGGGAAAATAGTCTTATTCTGTT
TAAAGGTTAAGGGCGTTGCCTGCCTGAAAGCGCCAGTAGTATTATTTAATATTTATTTTA
AAGTTTGAGGCAAGAGATGAAGCAGACTTCCCAACATTTAACAAATGTTTTTTTCAGGGG
GTGGCTGAGGGGGGAATATGTTTCTACTGCTTCTTTGTAGCTATAAAAATTAGTTTCATA
GCCTCCGGGAAAGTTGTGTTGCTTCTCTTAAAGATCTGTCCTAGGAGGGCTGGAAGTTGA
CTTGTCATTTGGTCTGTAACTTAAACTGATACAAAAGTTTTTTTGAATGTTAGCAGTGTG
CTTTTGGCACTTTACACATCTTGCTTCATCCTCAAAATAACCCTAAGAAGTAGATCCTGT
TGTCATTTTTCCTGTTTTACAGATGAGAAACCAGAGGTTCAGGCCCTAGTCTCATGTCAT
GTAAGTTGCAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGAAGCCTTGCATCTATTTCCATTTCCCCAGGACCGAAATCTTAAAACAGAAAAGCTA
CTTCCCCTTAGCTTTCAAAACAAAAGTAGGGCTTGTAAATCTGAACTCAACTGTTGCATA
CTGCTAGAGGGAATGACTTTGATACTAGGTACGATTTTTGGTGAGAATTTCTTTTTTAAA
AATTCTGTTAGAACTTGAACAAAAAAAAAATATGTATGACTGATACACTTTGCTATACAC
CTGAAACTAACACAATGTTCTAAGTTACCTATACTCTAATAAATTTAATTTTTTTGAAGA
GGAAAGCCCAGAACATTAATCACTGTGCATGTTCCATAGCAAAAGGCTGAGAAATTTAAA
CCAAGTCTGTTAAGACATGTATAAGCTGAGTATGTTGATTTCTGTGGTAGATAAAGCAGT
GCTGTGTCCGAAGGCTGTGTTACTATTTTTCTTAGATCCCCTTGGAACTGGATATGTTGT
TTAATGGCAGAAGACATTTCTATGTTAGGCCAGTCGTAGTGCCCCTCAAAACTTTGTGTT
TAGGGTATCAGAGTCATGGACTAAATTAAGTGATTATCTGCCTATTAAAAAAAGCTGAAG
TCATTTGAAGAAAACTGAACAGGTGCAGGAAGATAAGCCATTTGAAAATGTAAAGTGCGT
CTGAGAAAGCCTTTTGAAAGTCAGAGGGTTTTATGGATTTCTTTTGTCATTAATAATTGA
ACTTAGTGTAAAAGATATTTTAGCTGGATAGACTTACAAGGCTGGTAAAAGTACAGGAAT
TTTTTTTTTATAGATTGTTTTTGCATTGCCTTTGATGTGTCTCTATATCTTGAGCTAATT
AATGATTGAAAGAAAAATCTGTGGAACTCAGTGTTTTTATGGCTTTTGGGATGGGGTGGG
GTCAAAGATGACTGTGTGTTGGGGGCAGAGGGAGTTCTTTTGAAAGGC------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------TATGCTTCAGGTGGGGCCCTAAAAAGCAAAAAAAAG
AAAAAAAAAAGGCAGACTGAGATCGTGGGCCACTTAGCCTGTTTGCTTCTGCTTTGGCCA
CAGGTGCAGGCAGTCTGTTTTACAAAGAGTTAAAGTTCTGCTTCTAAACAGATGCCTTTC
CAGTGTTTTTTCCTGCTGCTCTGAAAAACCATATGTGGGGGAAAATAGTCTTATTCTGTT
TAAAGGTTAAGGGCGTTGCCTGCCTGAAAGCGCCAGTAGTATTATTTAATATTTATTTTA
AAGTTTGAGGCAAGAGATGAAGCAGACTTCCCAACATTTAACAAATGTTTTTTTCAGGGG
GTGGCTGAGGGGGGAATATGTTTCTACTGCTTCTTTGTAGCTATAAAAATTAGTTTCATA
GCCTCCGGGAAAGTTGTGTTGCTTCTCTTAAAGATCTGTCCTAGGAGGGCTGGAAGTTGA
CTTGTCATTTGGTCTGTAACTTAAACTGATACAAAAGTTTTTTTGAATGTTAGCAGTGTG
CTTTTGGCACTTTACACATCTTGCTTCATCCTCAAAATAACCCTAAGAAGTAGATCCTGT
TGTCATTTTTCCTGTTTTACAGATGAGAAACCAGAGGTTCAGGCCCTAGTCTCATGTCAT
GTAAGTTGCAGA

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

Help | Less info


               
               1-209, gnl|bosTau2|chr4 (49170484-49170693)
               

               
               1-209, gnl|Hg17|chr7 (129150447-129150240)
               

               
               1-209, gnl|Mm7|chr6 (30209070-30208791)
               


               
               295-938, gnl|bosTau2|chr4 (49170708-49171329)
               

               
               295-938, gnl|Hg17|chr7 (129150216-129149577)
               


               
               1007-1269, gnl|bosTau2|chr4 (49171339-49171594)
               

               
               1007-1269, gnl|Hg17|chr7 (129149557-129148983)
               


               
               1274-1568, gnl|bosTau2|chr4 (49171631-49171935)
               

               
               1274-1568, gnl|Hg17|chr7 (129148964-129148652)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-209, gnl|bosTau2|chr4 (49170484-49170693)
               

               
               1-209, gnl|Hg17|chr7 (129150447-129150240)
               

               
               1-209, gnl|Mm7|chr6 (30209070-30208791)
               


               
               295-938, gnl|bosTau2|chr4 (49170708-49171329)
               

               
               295-938, gnl|Hg17|chr7 (129150216-129149577)
               


               
               1007-1269, gnl|bosTau2|chr4 (49171339-49171594)
               

               
               1007-1269, gnl|Hg17|chr7 (129149557-129148983)
               


               
               1274-1568, gnl|bosTau2|chr4 (49171631-49171935)
               

               
               1274-1568, gnl|Hg17|chr7 (129148964-129148652)

	1-209, gnl\|bosTau2\|chr4 (49170484-49170693)
	1-209, gnl\|Hg17\|chr7 (129150447-129150240)
	1-209, gnl\|Mm7\|chr6 (30209070-30208791)

	295-938, gnl\|bosTau2\|chr4 (49170708-49171329)
	295-938, gnl\|Hg17\|chr7 (129150216-129149577)

	1007-1269, gnl\|bosTau2\|chr4 (49171339-49171594)
	1007-1269, gnl\|Hg17\|chr7 (129149557-129148983)

	1274-1568, gnl\|bosTau2\|chr4 (49171631-49171935)
	1274-1568, gnl\|Hg17\|chr7 (129148964-129148652)