Non-Coding RNA Search

Ss1.1-LyN1-MLN01D070041.5

Sequence:


               
               GGGCGGGAACAGCAAAATGGCGCCAGAACTAGTGGCGGGCTGAGCATACTGGCTACTTTT
AAGCCGGCCCTGCGGTCCCGGGGCGGACCCGTCCCCTCCCAGACATGGAGGACGTGGAGG
CGCGCTTCGCCCACCTCCTGCAGCCCATCCGCGACCTCACCAAGAACTGGGAGGTGGACG
TGGCGGCCCAGCTGGGCGAATATCTGGAGGAGCTGGACCAGATCTGCATTTCTTTTGACG
AAGGCAAAACCACAATGAACTTCATCGAGGCAGCGCTGTTGATCCAGGGCTCCGCCTGTG
TCTACAGCAAGAAGGTGGAATACCTCTACTCGCTGGTCTACCAGGCCCTCGATTTCATCT
CTGGCAAGAAGCGGGCCAAGCAGCTCTTCACGCAGCAAGATGGGGCCGATGGGGAGGCCA
GCTCCAGGGCCCCCCGGGAGGCGGAGGACAAGTTCCTGTCGCTGGATGACCTGCCCGACT
CTCGCAGTAGCATGGATCTGAGGAGTGACCCGGCCCCTGGCGAGACCCTCATCGTCCCCC
TCCTTCCCATGGCTCTGGTGGCCCCTGACGAGGTGGAGAAGAACAGTAACCCCCTGTACA
GCTGCCAGGGGGAGGTTCTGGGCAGCCGGAAGGACTTCAGGATGAATACGTGCACCCCCC
ACCCCAGAGGAGCCTTCATGTTGGAGCCGGTGGGCGCGTCCCCCACAGAGGCACTGCCAC
CAGGGAACCCGAAGGAGGCTGAGGAGCAGCCAATGGAAGTCTCTGTGTGCAGGAGTCCGG
GCCTGGTGCTCAGCATCTCTCANGAGCCAGGCATCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCGGGAACAGCAAAATGGCGCCAGAACTAGTGGCGGGCTGAGCATACTGGCTACTTTT
AAGCCGGCCCTGCGGTCCCGGGGCGGACCCGTCCCCTCCCAGACATGGAGGACGTGGAGG
CGCGCTTCGCCCACCTCCTGCAGCCCATCCGCGACCTCACCAAGAACTGGGAGGTGGACG
TGGCGGCCCAGCTGGGCGAATATCTGGAGGAGCTGGACCAGATCTGCATTTCTTTTGACG
AAGGCAAAACCACAATGAACTTCATCGAGGCAGCGCTGTTGATCCAGGGCTCCGCCTGTG
TCTACAGCAAGAAGGTGGAATACCTCTACTCGCTGGTCTACCAGGCCCTCGATTTCATCT
CTGGCAAGAAGCGGGCCAAGCAGCTCTTCACGCAGCAAGATGGGGCCGATGGGGAGGCCA
GCTCCAGGGCCCCCCGGGAGGCGGAGGACAAGTTCCTGTCGCTGGATGACCTGCCCGACT
CTCGCAGTAGCATGGATCTGAGGAGTGACCCGGCCCCTGGCGAGACCCTCATCGTCCCCC
TCCTTCCCATGGCTCTGGTGGCCCCTGACGAGGTGGAGAAGAACAGTAACCCCCTGTACA
GCTGCCAGGGGGAGGTTCTGGGCAGCCGGAAGGACTTCAGGATGAATACGTGCACCCCCC
ACCCCAGAGGAGCCTTCATGTTGGAGCCGGTGGGCGCGTCCCCCACAGAGGCACTGCCAC
CAGGGAACCCGAAGGAGGCTGAGGAGCAGCCAATGGAAGTCTCTGTGTGCAGGAGTCCGG
GCCTGGTGCTCAGCATCTCTCANGAGCCAGGCATCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61865816|ref|XP_594142.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61865816|ref|XP_594142.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               111-215, + strand, RNAz p=0.773331

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               111-215, + strand, RNAz p=0.773331

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               96-215, gnl|bosTau2|chr5 (75778453-75778334)
               

               
               96-215, gnl|canFam2|chr10 (19789639-19789514)
               

               
               96-215, gnl|danRer3|chr4 (19698215-19698334)
               

               
               96-215, gnl|echTel1|scaffold_178212 (3330-3196)
               

               
               96-215, gnl|galGal2|chrUn (139789806-139789925)
               

               
               96-215, gnl|hg17|chr22 (49236903-49237028)
               

               
               96-215, gnl|Hg17|chr22 (49236902-49237021)
               

               
               96-215, gnl|loxAfr1|scaffold_60817 (9588-9713)
               

               
               96-215, gnl|mm7|chr15 (89438706-89438831)
               

               
               96-215, gnl|Mm7|chr15 (89438701-89438824)
               

               
               96-215, gnl|oryCun1|scaffold_138846 (980-854)
               

               
               96-215, gnl|panTro1|chr23 (49727794-49727919)
               

               
               96-215, gnl|rheMac2|chr10 (94530789-94530914)
               

               
               96-215, gnl|rn3|chr7 (127685039-127685164)
               

               
               96-215, gnl|tetNig1|chrUn_random (126322829-126322708)
               

               
               96-215, gnl|xenTro1|scaffold_534 (885709-885825)
               


               
               599-735, gnl|bosTau2|chr5 (75772428-75772292)
               

               
               599-735, gnl|Hg17|chr22 (49246698-49246851)
               

               
               599-735, gnl|Mm7|chr15 (89446963-89447120)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               96-215, gnl|bosTau2|chr5 (75778453-75778334)
               

               
               96-215, gnl|canFam2|chr10 (19789639-19789514)
               

               
               96-215, gnl|danRer3|chr4 (19698215-19698334)
               

               
               96-215, gnl|echTel1|scaffold_178212 (3330-3196)
               

               
               96-215, gnl|galGal2|chrUn (139789806-139789925)
               

               
               96-215, gnl|hg17|chr22 (49236903-49237028)
               

               
               96-215, gnl|Hg17|chr22 (49236902-49237021)
               

               
               96-215, gnl|loxAfr1|scaffold_60817 (9588-9713)
               

               
               96-215, gnl|mm7|chr15 (89438706-89438831)
               

               
               96-215, gnl|Mm7|chr15 (89438701-89438824)
               

               
               96-215, gnl|oryCun1|scaffold_138846 (980-854)
               

               
               96-215, gnl|panTro1|chr23 (49727794-49727919)
               

               
               96-215, gnl|rheMac2|chr10 (94530789-94530914)
               

               
               96-215, gnl|rn3|chr7 (127685039-127685164)
               

               
               96-215, gnl|tetNig1|chrUn_random (126322829-126322708)
               

               
               96-215, gnl|xenTro1|scaffold_534 (885709-885825)
               


               
               599-735, gnl|bosTau2|chr5 (75772428-75772292)
               

               
               599-735, gnl|Hg17|chr22 (49246698-49246851)
               

               
               599-735, gnl|Mm7|chr15 (89446963-89447120)

	96-215, gnl\|bosTau2\|chr5 (75778453-75778334)
	96-215, gnl\|canFam2\|chr10 (19789639-19789514)
	96-215, gnl\|danRer3\|chr4 (19698215-19698334)
	96-215, gnl\|echTel1\|scaffold_178212 (3330-3196)
	96-215, gnl\|galGal2\|chrUn (139789806-139789925)
	96-215, gnl\|hg17\|chr22 (49236903-49237028)
	96-215, gnl\|Hg17\|chr22 (49236902-49237021)
	96-215, gnl\|loxAfr1\|scaffold_60817 (9588-9713)
	96-215, gnl\|mm7\|chr15 (89438706-89438831)
	96-215, gnl\|Mm7\|chr15 (89438701-89438824)
	96-215, gnl\|oryCun1\|scaffold_138846 (980-854)
	96-215, gnl\|panTro1\|chr23 (49727794-49727919)
	96-215, gnl\|rheMac2\|chr10 (94530789-94530914)
	96-215, gnl\|rn3\|chr7 (127685039-127685164)
	96-215, gnl\|tetNig1\|chrUn_random (126322829-126322708)
	96-215, gnl\|xenTro1\|scaffold_534 (885709-885825)

	599-735, gnl\|bosTau2\|chr5 (75772428-75772292)
	599-735, gnl\|Hg17\|chr22 (49246698-49246851)
	599-735, gnl\|Mm7\|chr15 (89446963-89447120)