Non-Coding RNA Search

Ss1.1-LyN1-MLN01D070049.5

Sequence:


               
               TTTCCGGTTAGGCTTCATGTTCCACTTTTACAAGATTCTTGATATTGGATCTGTTATCAC
GGGTAGGGAGGGGCAGGGGCTTGGTCTACCCAATTAGATGCCTCTGATTCTGAAATGTAA
CTGAAGGTGGTGAAGTTTCTGAACTGAGGTTGCACACCTTTTCCCTTCAGTGATGGGTTA
AGGCTTGAGAACCAAAGCTAAATAATAAATAATCTTAAGTTTGAAATTTGATGGGAAGGA
AAAAAGAGTATGTCTTTAAAAAAAGAGAGCAGGTAGAATAATGTCCCCAGGCCAGGAAAG
TACCAGTCATTTTCAGATAAATTATACCCTCCTCCTCCTCCACGGGAAAAAAAAAAAAAT
CATACTCAGACTTAACTGTCCCTTTGGCACTTTTGTCAAATGAGTTTTAGTAGCAGGAGC
TGCTAAAAATATAAGCCAATTTCTTTCTTCATTTAAATCAAGTGCTTAAAAAAAGTGTAG
CGCCTAGAACTGGTGCAGGGCTCAGCATAGCAGCAGCTGGTCTGCCTGAGTCCCTGAATA
GTTCTCAGTGACAGCCCAGCGCCCTCTCAGAGCTAAGGGAAGGTAGCCGTGAGGCTGGCA
ATTGCCCCTCGAGAGTGGGGAATGGTTTTAGCACCTGGGACCCAAGCTGAAAAGGTGCCC
TTGGGTATGTACTGACCAGGTTAGATGTGGGAGGACCTCGAAAGAGTAATTTCTGGTTTG
GACATTCGTTATACCTTCCTTCCTGCCTGCCTGCCTCTCTTCCTCTCTCCATCCTTCCTT
CCCTCTGTCCCTTCCTCTTTCCTTCCTTCTTTCCTTCCCTCCCTCCCTTTCTCCCTCCTC
CCTCCTTCCTTCGTTCCTTCCTTACTTTTTCCCTTCTTTCCTTTCATCCTTCCTTATTTT
CTTCCTTTGGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCCGGTTAGGCTTCATGTTCCACTTTTACAAGATTCTTGATATTGGATCTGTTATCAC
GGGTAGGGAGGGGCAGGGGCTTGGTCTACCCAATTAGATGCCTCTGATTCTGAAATGTAA
CTGAAGGTGGTGAAGTTTCTGAACTGAGGTTGCACACCTTTTCCCTTCAGTGATGGGTTA
AGGCTTGAGAACCAAAGCTAAATAATAAATAATCTTAAGTTTGAAATTTGATGGGAAGGA
AAAAAGAGTATGTCTTTAAAAAAAGAGAGCAGGTAGAATAATGTCCCCAGGCCAGGAAAG
TACCAGTCATTTTCAGATAAATTATACCCTCCTCCTCCTCCACGGGAAAAAAAAAAAAAT
CATACTCAGACTTAACTGTCCCTTTGGCACTTTTGTCAAATGAGTTTTAGTAGCAGGAGC
TGCTAAAAATATAAGCCAATTTCTTTCTTCATTTAAATCAAGTGCTTAAAAAAAGTGTAG
CGCCTAGAACTGGTGCAGGGCTCAGCATAGCAGCAGCTGGTCTGCCTGAGTCCCTGAATA
GTTCTCAGTGACAGCCCAGCGCCCTCTCAGAGCTAAGGGAAGGTAGCCGTGAGGCTGGCA
ATTGCCCCTCGAGAGTGGGGAATGGTTTTAGCACCTGGGACCCAAGCTGAAAAGGTGCCC
TTGGGTATGTACTGACCAGGTTAGATGTGGGAGGACCTCGAAAGAGTAATTTCTGGTTTG
GACATTCGTTATACCTTCCTTCCTGCCTGCCTGCCTCTCTTCCTCTCTCCATCCTTCCTT
CCCTCTGTCCCTTCCTCTTTCCTTCCTTCTTTCCTTCCCTCCCTCCCTTTCTCCCTCCTC
CCTCCTTCCTTCGTTCCTTCCTTACTTTTTCCCTTCTTTCCTTTCATCCTTCCTTATTTT
CTTCCTTTGGAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               345-499, - strand, RNAz p=0.921596

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               345-499, - strand, RNAz p=0.921596

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-863, gnl|bosTau2|chr10 (37605280-37604423)
               

               
               1-863, gnl|Hg17|chr15 (58906537-58905728)
               

               
               1-863, gnl|Mm7|chr9 (69081107-69081848)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-863, gnl|bosTau2|chr10 (37605280-37604423)
               

               
               1-863, gnl|Hg17|chr15 (58906537-58905728)
               

               
               1-863, gnl|Mm7|chr9 (69081107-69081848)

	1-863, gnl\|bosTau2\|chr10 (37605280-37604423)
	1-863, gnl\|Hg17\|chr15 (58906537-58905728)
	1-863, gnl\|Mm7\|chr9 (69081107-69081848)