Non-Coding RNA Search

Ss1.1-LyN1-MLN01D110006.5

Sequence:


               
               TTGAATCCTACTTCCTCTGGCAGTTTCTCCCATCGCCATGTCGGAAACCGCTCCTGCTGA
GACGGCTGCCCCGGCGCCGGTGGAGAAATCCCCTGCTAAGAAGAAGGCGACAAAGAAGCC
TGCGAGCGGAGGGGCGGCCAAGCGGAAGGCAACTGGCCCCCCAGTTTCTGAGCTGATCAC
TAAGGCCGTGGCCGCCTCCAAAGAGCGCAATGGCCTCTCTTTGGCTGCGCTCAAGAAGGC
GCTGGCAGCGGGAGGCTACGATGTGGAGAAGAACAACAGCCGCATCAAGCTGGGTCTCAA
GAGCCTGGTGAGCAAGGGCACCCTGGTGCAGACCAAGGGCACCGGTGCTTCTGGCTCCTT
TAAGCTCAATAAGAAGGCAGCCACCGGGGAAGCCAAGCCCAAAGCGAAGAAGGCTGGGGC
CGCTAAGGCAAAGAAGCCTGCCGGGTCCACCCCTAAGAAGCCAAAGAAGGCTGCGGGGGC
CAAGAAAGCTGTGAAGAAGACGCCCAAGAAGGCCAAGAAACCCGCGGCTGCTGGCGTCAA
AAAGGTGGCCAAGAGCCCTAAGAAGGCGAAGGCCGCCGCCAAGCCGAAAAAGACTGCCAA
GAGCCCCGCTAAGCCCAAGGCTGTGAAGCCTAAGGCCGCCAAGCCCAAAGCCGCAAAGCC
TAAGGCAGCAAAACCCAAAGCTGCAAAGGCCAAGAAGGCGGCTCCCAAGAAGAAGTAGGA
AGTTGGCGCTCGAGGTAGCAAACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGAATCCTACTTCCTCTGGCAGTTTCTCCCATCGCCATGTCGGAAACCGCTCCTGCTGA
GACGGCTGCCCCGGCGCCGGTGGAGAAATCCCCTGCTAAGAAGAAGGCGACAAAGAAGCC
TGCGAGCGGAGGGGCGGCCAAGCGGAAGGCAACTGGCCCCCCAGTTTCTGAGCTGATCAC
TAAGGCCGTGGCCGCCTCCAAAGAGCGCAATGGCCTCTCTTTGGCTGCGCTCAAGAAGGC
GCTGGCAGCGGGAGGCTACGATGTGGAGAAGAACAACAGCCGCATCAAGCTGGGTCTCAA
GAGCCTGGTGAGCAAGGGCACCCTGGTGCAGACCAAGGGCACCGGTGCTTCTGGCTCCTT
TAAGCTCAATAAGAAGGCAGCCACCGGGGAAGCCAAGCCCAAAGCGAAGAAGGCTGGGGC
CGCTAAGGCAAAGAAGCCTGCCGGGTCCACCCCTAAGAAGCCAAAGAAGGCTGCGGGGGC
CAAGAAAGCTGTGAAGAAGACGCCCAAGAAGGCCAAGAAACCCGCGGCTGCTGGCGTCAA
AAAGGTGGCCAAGAGCCCTAAGAAGGCGAAGGCCGCCGCCAAGCCGAAAAAGACTGCCAA
GAGCCCCGCTAAGCCCAAGGCTGTGAAGCCTAAGGCCGCCAAGCCCAAAGCCGCAAAGCC
TAAGGCAGCAAAACCCAAAGCTGCAAAGGCCAAGAAGGCGGCTCCCAAGAAGAAGTAGGA
AGTTGGCGCTCGAGGTAGCAAACC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               H15_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               H15_HUMAN

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               1-117, - strand, RNAz p=0.878895
               

               
               193-437, - strand, RNAz p=0.941168

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-117, - strand, RNAz p=0.878895
               

               
               193-437, - strand, RNAz p=0.941168

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-744, gnl|bosTau2|chr3 (62446741-62447483)
               

               
               1-744, gnl|Hg17|chr6 (27943321-27942575)
               

               
               1-744, gnl|Mm7|chr13 (21146582-21145847)
               


               
               34-720, gnl|bosTau2|chr23 (25831777-25832439)
               

               
               34-720, gnl|Hg17|chr6 (26125943-26125291)
               

               
               34-720, gnl|Mm7|chr13 (23129515-23130161)
               


               
               37-697, gnl|bosTau2|chr12 (1644961-1644301)
               

               
               37-697, gnl|Hg17|chr6 (26343141-26342481)
               

               
               37-697, gnl|Mm7|chr13 (22921082-22921742)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-744, gnl|bosTau2|chr3 (62446741-62447483)
               

               
               1-744, gnl|Hg17|chr6 (27943321-27942575)
               

               
               1-744, gnl|Mm7|chr13 (21146582-21145847)
               


               
               34-720, gnl|bosTau2|chr23 (25831777-25832439)
               

               
               34-720, gnl|Hg17|chr6 (26125943-26125291)
               

               
               34-720, gnl|Mm7|chr13 (23129515-23130161)
               


               
               37-697, gnl|bosTau2|chr12 (1644961-1644301)
               

               
               37-697, gnl|Hg17|chr6 (26343141-26342481)
               

               
               37-697, gnl|Mm7|chr13 (22921082-22921742)

	1-117, - strand, RNAz p=0.878895
	193-437, - strand, RNAz p=0.941168

	1-744, gnl\|bosTau2\|chr3 (62446741-62447483)
	1-744, gnl\|Hg17\|chr6 (27943321-27942575)
	1-744, gnl\|Mm7\|chr13 (21146582-21145847)

	34-720, gnl\|bosTau2\|chr23 (25831777-25832439)
	34-720, gnl\|Hg17\|chr6 (26125943-26125291)
	34-720, gnl\|Mm7\|chr13 (23129515-23130161)

	37-697, gnl\|bosTau2\|chr12 (1644961-1644301)
	37-697, gnl\|Hg17\|chr6 (26343141-26342481)
	37-697, gnl\|Mm7\|chr13 (22921082-22921742)