Ss1.1-LyN1-MLN01D110094.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATCCGGGTCCTGGGCGAGCGGGCGCCGTGCGCGTGTCCCGCGGCCGAGCTGCTAATAAAG TTGCGCCGAGGGAAAGCGCGGCGACGGCGCCGGGAGAGCGCGCGCCGCCGGCCCGACTTG AACCAATGAAAGAAGCTTACGGCCCTGAGGAAGATACATGTCACTCCTCCCTTTTAATTG GTGCTTTTGCTTAGGACCTGTACATGCCTTTTCACCGGTGATCTGTTCCTTCAGTAGCCA CTGACTTTGAGTTGCAGGACGATCTCTGAAGATTTTTATCAAATGACGTCAATGGCCAGC TTGTTTTCTTTTACTAGTCCAGCAGTAAAGCGGTTGTTGGGCTGGAAGCAAGGTGATGAA GAAGAGAAATGGGCAGAAAAGGCAGTCGATGCTTTGGTGAAGAAGCTAAAAAAGAAAAAG GGTGCCATGGAGGAACTGGAAAAAGCCTTGAGCAGCCCAGGACAGCCGAGCAAATGTGTC ACTATTCCCAGATCTTTAGACGGACGCCTGCAGGTTTCTCACAGAAAAGGCTTACCCCAT GTTATATATTGTCGTGTTTGGCGCTGGCCTGATTTGCAGAGTCATCATGAGCTAAAGCCA TTGGATATTTGTGAATTTCCTTTTGGATCTAAGCAAAAAGAAGTTTGTATCAACCCATAC CACTATAAGAGAGTGGAGAGTCCAGGTAGGTTTTTACTCCCCTGGGAAGAATCATAAAAA CCTCTCTCATAATTTGCACTTGACTGAATTTAGTAATTGAAAGGTAATTTTAGCCTCATG TTTCCTTCTTAAAGTTTTAATCTTGAGGCGTTCCCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATCCGGGTCCTGGGCGAGCGGGCGCCGTGCGCGTGTCCCGCGGCCGAGCTGCTAATAAAG TTGCGCCGAGGGAAAGCGCGGCGACGGCGCCGGGAGAGCGCGCGCCGCCGGCCCGACTTG AACCAATGAAAGAAGCTTACGGCCCTGAGGAAGATACATGTCACTCCTCCCTTTTAATTG GTGCTTTTGCTTAGGACCTGTACATGCCTTTTCACCGGTGATCTGTTCCTTCAGTAGCCA CTGACTTTGAGTTGCAGGACGATCTCTGAAGATTTTTATCAAATGACGTCAATGGCCAGC TTGTTTTCTTTTACTAGTCCAGCAGTAAAGCGGTTGTTGGGCTGGAAGCAAGGTGATGAA GAAGAGAAATGGGCAGAAAAGGCAGTCGATGCTTTGGTGAAGAAGCTAAAAAAGAAAAAG GGTGCCATGGAGGAACTGGAAAAAGCCTTGAGCAGCCCAGGACAGCCGAGCAAATGTGTC ACTATTCCCAGATCTTTAGACGGACGCCTGCAGGTTTCTCACAGAAAAGGCTTACCCCAT GTTATATATTGTCGTGTTTGGCGCTGGCCTGATTTGCAGAGTCATCATGAGCTAAAGCCA TTGGATATTTGTGAATTTCCTTTTGGATCTAAGCAAAAAGAAGTTTGTATCAACCCATAC CACTATAAGAGAGTGGAGAGTCCAGGTAGGTTTTTACTCCCCTGGGAAGAATCATAAAAA CCTCTCTCATAATTTGCACTTGACTGAATTTAGTAATTGAAAGGTAATTTTAGCCTCATG TTTCCTTCTTAAAGTTTTAATCTTGAGGCGTTCCCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 235-394, + strand, RNAz p=0.993765 | |
| 293-706, - strand, RNAz p=0.994314 | |
| 568-688, - strand, RNAz p=0.718997 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 235-394, + strand, RNAz p=0.993765 | |
| 293-706, - strand, RNAz p=0.994314 | |
| 568-688, - strand, RNAz p=0.718997 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 1-115, gnl|bosTau2|chr7 (31486027-31485913) | |
| 1-115, gnl|canFam2|chr11 (27039340-27039532) | |
| 1-115, gnl|dasNov1|scaffold_114402 (366-573) | |
| 1-115, gnl|echTel1|scaffold_315596 (119055-119255) | |
| 1-115, gnl|hg17|chr5 (135496346-135496550) | |
| 1-115, gnl|Hg17|chr5 (135496433-135496547) | |
| 1-115, gnl|mm7|chr13 (55794649-55794833) | |
| 1-115, gnl|Mm7|chr13 (55794715-55794830) | |
| 1-115, gnl|monDom2|scaffold_6 (108158168-108157906) | |
| 1-115, gnl|oryCun1|scaffold_197149 (10480-10270) | |
| 1-115, gnl|panTro1|chr4 (142088291-142088495) | |
| 1-115, gnl|rheMac2|chr6 (132597414-132597618) | |
| 1-115, gnl|rn3|chr17 (13838770-13838592) | |
| 117-805, gnl|bosTau2|chr7 (31458990-31458298) | |
| 117-805, gnl|Hg17|chr5 (135517182-135517884) | |
| 117-805, gnl|Mm7|chr13 (55815133-55815810) | |
| 293-712, gnl|bosTau2|chr17 (14739451-14739031) | |
| 293-712, gnl|Hg17|chr4 (146793378-146793798) | |
| 293-712, gnl|Mm7|chr8 (77912399-77911999) | |
| 304-693, gnl|bosTau2|chr11 (79658884-79659273) | |
| 304-693, gnl|Hg17|chr13 (36351796-36351407) | |
| 304-693, gnl|Mm7|chr3 (54911600-54911988) | |
| 489-688, gnl|bosTau2|chr10 (6342278-6342079) | |
| 489-688, gnl|canFam2|chr30 (34332147-34332376) | |
| 489-688, gnl|danRer3|chr18 (23927679-23927888) | |
| 489-688, gnl|dasNov1|scaffold_835 (127215-127440) | |
| 489-688, gnl|echTel1|scaffold_317384 (8930-8708) | |
| 489-688, gnl|fr1|chrUn (67840453-67840248) | |
| 489-688, gnl|galGal2|chr10 (19518656-19518873) | |
| 489-688, gnl|hg17|chr15 (65244255-65244485) | |
| 489-688, gnl|Hg17|chr15 (65244284-65244483) | |
| 489-688, gnl|loxAfr1|scaffold_2367 (30889-31118) | |
| 489-688, gnl|mm7|chr9 (63696427-63696197) | |
| 489-688, gnl|Mm7|chr9 (63696395-63696196) | |
| 489-688, gnl|monDom2|scaffold_12 (45207298-45207074) | |
| 489-688, gnl|oryCun1|scaffold_210508 (66935-67161) | |
| 489-688, gnl|panTro1|chr16_random (18169932-18169702) | |
| 489-688, gnl|rheMac2|chr7 (45735510-45735740) | |
| 489-688, gnl|rn3|chr8 (67860496-67860266) | |
| 489-688, gnl|tetNig1|chr13 (7691845-7692062) | |
| 489-688, gnl|xenTro1|scaffold_5 (25090-25306) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-115, gnl|bosTau2|chr7 (31486027-31485913) | |
| 1-115, gnl|canFam2|chr11 (27039340-27039532) | |
| 1-115, gnl|dasNov1|scaffold_114402 (366-573) | |
| 1-115, gnl|echTel1|scaffold_315596 (119055-119255) | |
| 1-115, gnl|hg17|chr5 (135496346-135496550) | |
| 1-115, gnl|Hg17|chr5 (135496433-135496547) | |
| 1-115, gnl|mm7|chr13 (55794649-55794833) | |
| 1-115, gnl|Mm7|chr13 (55794715-55794830) | |
| 1-115, gnl|monDom2|scaffold_6 (108158168-108157906) | |
| 1-115, gnl|oryCun1|scaffold_197149 (10480-10270) | |
| 1-115, gnl|panTro1|chr4 (142088291-142088495) | |
| 1-115, gnl|rheMac2|chr6 (132597414-132597618) | |
| 1-115, gnl|rn3|chr17 (13838770-13838592) | |
| 117-805, gnl|bosTau2|chr7 (31458990-31458298) | |
| 117-805, gnl|Hg17|chr5 (135517182-135517884) | |
| 117-805, gnl|Mm7|chr13 (55815133-55815810) | |
| 293-712, gnl|bosTau2|chr17 (14739451-14739031) | |
| 293-712, gnl|Hg17|chr4 (146793378-146793798) | |
| 293-712, gnl|Mm7|chr8 (77912399-77911999) | |
| 304-693, gnl|bosTau2|chr11 (79658884-79659273) | |
| 304-693, gnl|Hg17|chr13 (36351796-36351407) | |
| 304-693, gnl|Mm7|chr3 (54911600-54911988) | |
| 489-688, gnl|bosTau2|chr10 (6342278-6342079) | |
| 489-688, gnl|canFam2|chr30 (34332147-34332376) | |
| 489-688, gnl|danRer3|chr18 (23927679-23927888) | |
| 489-688, gnl|dasNov1|scaffold_835 (127215-127440) | |
| 489-688, gnl|echTel1|scaffold_317384 (8930-8708) | |
| 489-688, gnl|fr1|chrUn (67840453-67840248) | |
| 489-688, gnl|galGal2|chr10 (19518656-19518873) | |
| 489-688, gnl|hg17|chr15 (65244255-65244485) | |
| 489-688, gnl|Hg17|chr15 (65244284-65244483) | |
| 489-688, gnl|loxAfr1|scaffold_2367 (30889-31118) | |
| 489-688, gnl|mm7|chr9 (63696427-63696197) | |
| 489-688, gnl|Mm7|chr9 (63696395-63696196) | |
| 489-688, gnl|monDom2|scaffold_12 (45207298-45207074) | |
| 489-688, gnl|oryCun1|scaffold_210508 (66935-67161) | |
| 489-688, gnl|panTro1|chr16_random (18169932-18169702) | |
| 489-688, gnl|rheMac2|chr7 (45735510-45735740) | |
| 489-688, gnl|rn3|chr8 (67860496-67860266) | |
| 489-688, gnl|tetNig1|chr13 (7691845-7692062) | |
| 489-688, gnl|xenTro1|scaffold_5 (25090-25306) |