Ss1.1-LyN1-MLN01E010050.5
|
TTTTTCTGATTTTCCTGTGGCTTTTCTTTCTCTGCAAATATCCAGAATGTCTGGACGAGG
CAAGCAAGGCGGAAAAGCTCGCGCTAAAGCTAAGACTCGCTCTTCTAGGGCTGGTCTCCA
GTTTCCAGTGGGCCGAGTGCATCGCCTGCTCCGAAAAGGCAACTATTCCGAGCGGGTTGG
CGCTGGTGCTCCGGTGTATTTAGCGGCGGTGCTGGAGTATCTGACCGCTGAGATCCTGGA
GCTGGCGGGCAACGCGGCACGAGACAACAAGAAGACCCGCATCATCCCGCGCCACTTGCA
GTTGGCCATCCGCAACGACCAAGAGCTCAACAAGCTGTTGGGTCGTGTAACCATCGCTCA
GGGCGGCGTCCTGCCCAACATCCAGGCGGTGCTGCTGCCCAAGAAGACCGAGAGCCACCA
CAAGGCCAAGGGCAAGTGATTTGACAGGGACCTGAGCTTCCGGAAGTGCTTTCAAACCCA
AAGGCTCTTTTCAGAGCCCCCTAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TTTTTCTGATTTTCCTGTGGCTTTTCTTTCTCTGCAAATATCCAGAATGTCTGGACGAGG
CAAGCAAGGCGGAAAAGCTCGCGCTAAAGCTAAGACTCGCTCTTCTAGGGCTGGTCTCCA
GTTTCCAGTGGGCCGAGTGCATCGCCTGCTCCGAAAAGGCAACTATTCCGAGCGGGTTGG
CGCTGGTGCTCCGGTGTATTTAGCGGCGGTGCTGGAGTATCTGACCGCTGAGATCCTGGA
GCTGGCGGGCAACGCGGCACGAGACAACAAGAAGACCCGCATCATCCCGCGCCACTTGCA
GTTGGCCATCCGCAACGACCAAGAGCTCAACAAGCTGTTGGGTCGTGTAACCATCGCTCA
GGGCGGCGTCCTGCCCAACATCCAGGCGGTGCTGCTGCCCAAGAAGACCGAGAGCCACCA
CAAGGCCAAGGGCAAGTGATTTGACAGGGACCTGAGCTTCCGGAAGTGCTTTCAAACCCA
AAGGCTCTTTTCAGAGCCCCCTAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
478-503, , RaveNnA Score=34.79 |
PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)
|
478-503, , RaveNnA Score=34.79 |
|
44-503, gnl|bosTau2|chr3 (62448275-62447829) |
|
44-503, gnl|canFam2|chr35 (27083989-27083710) |
|
44-503, gnl|danRer3|chrUn (92092350-92092067) |
|
44-503, gnl|dasNov1|scaffold_12917 (10351-10633) |
|
44-503, gnl|echTel1|scaffold_282562 (8484-8233) |
|
44-503, gnl|fr1|chrUn (216207156-216207416) |
|
44-503, gnl|galGal2|chr1 (44925232-44924956) |
|
44-503, gnl|hg17|chr6 (25990224-25990510) |
|
44-503, gnl|Hg17|chr6 (27941109-27941555) |
|
44-503, gnl|loxAfr1|scaffold_7950 (56427-56148) |
|
44-503, gnl|mm7|chr13 (22936706-22936989) |
|
44-503, gnl|Mm7|chr13 (21087802-21087425) |
|
44-503, gnl|monDom2|scaffold_66 (8423409-8423131) |
|
44-503, gnl|oryCun1|scaffold_81358 (9333-9621) |
|
44-503, gnl|panTro1|chr5 (26464156-26464443) |
|
44-503, gnl|rheMac2|chr4 (25882667-25882956) |
|
44-503, gnl|rn3|chr17 (50390718-50390439) |
|
44-503, gnl|tetNig1|chr7 (1134576-1134852) |
|
44-503, gnl|xenTro1|scaffold_450 (1021075-1020786) |
| |
|
47-498, gnl|bosTau2|chr12 (1673229-1672776) |
|
47-498, gnl|Mm7|chr13 (22899900-22900363) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
44-503, gnl|bosTau2|chr3 (62448275-62447829) |
|
44-503, gnl|canFam2|chr35 (27083989-27083710) |
|
44-503, gnl|danRer3|chrUn (92092350-92092067) |
|
44-503, gnl|dasNov1|scaffold_12917 (10351-10633) |
|
44-503, gnl|echTel1|scaffold_282562 (8484-8233) |
|
44-503, gnl|fr1|chrUn (216207156-216207416) |
|
44-503, gnl|galGal2|chr1 (44925232-44924956) |
|
44-503, gnl|hg17|chr6 (25990224-25990510) |
|
44-503, gnl|Hg17|chr6 (27941109-27941555) |
|
44-503, gnl|loxAfr1|scaffold_7950 (56427-56148) |
|
44-503, gnl|mm7|chr13 (22936706-22936989) |
|
44-503, gnl|Mm7|chr13 (21087802-21087425) |
|
44-503, gnl|monDom2|scaffold_66 (8423409-8423131) |
|
44-503, gnl|oryCun1|scaffold_81358 (9333-9621) |
|
44-503, gnl|panTro1|chr5 (26464156-26464443) |
|
44-503, gnl|rheMac2|chr4 (25882667-25882956) |
|
44-503, gnl|rn3|chr17 (50390718-50390439) |
|
44-503, gnl|tetNig1|chr7 (1134576-1134852) |
|
44-503, gnl|xenTro1|scaffold_450 (1021075-1020786) |
| |
|
47-498, gnl|bosTau2|chr12 (1673229-1672776) |
|
47-498, gnl|Mm7|chr13 (22899900-22900363) |
