Non-Coding RNA Search

Ss1.1-LyN1-MLN01E010084.5

Sequence:


               
               AGGCCCTACCGCCTACGCGCGCACCCGTGGGATCTCCAGATCTCCGACCCGGCGCGCGGC
ATCCGCCCCCTCCCCACTCTCAGCTCCAGGCCCGGCCAGGTCCTGGGAAGCTGCCGCGAG
GCGGCCGTGCCTGCAGTGTGGGCGGGGGCCGGGGGCCCGAGAGGTTCCGCCGCTATCGCG
CTGGGAGCCGCAGCGGTTCCGAGCGGGGCCCAACATGGCGGAGAGAGAGGTGGAGTCCAG
CCCCCGAAAGAGGTTTGAGCAGAAAGCTGGTGCAGTTTTTGATGAAATTGTAGAGAACTG
TGGTGGTATCATGGATACAGAAATGTCTGAAGATATAGACCACAACTTAACTCCTACCCT
TGACAGCATGTCTTATGGAATGCCGAATCAAACAGGATCTGAAAATTCATTGCTGGATGA
AGATGATTATTTTTTGAACTCTGGGGATCTTGCAGGAATTCCAGTCGTTGGTAGTGACAA
TGAGGATGAACAGGATTTTAGTTCAAAGGACAATCTTGTTTCTTCAATTCATACTGATGA
TAGCTTGGAAGTAGAGAGAAGAGTCACACAGCATGAATCAGACAATGAAAATGAAATACA
GATTCAAAATAAATTAAAAAAAGACTTTCCTAAACAGTTTGATCAGGTTTCTGTCTTTAA
ATCAATACGGAAAGATTTTAGTCTAGTAAGAGAAAACAGCAAAGAGACATTTTCTGGAAA
GGAGAAAAATAGAGACCTAACTTATCATGAACGTGAAAAACGGTTGGATAAACCCCATAA
AGAGTTGGATTCAAGGTTGAAAAGCAGTTTTTTTGATAAAGCAGCTAATCAAGTTGAAGA
AACATTACATACCCATTTACCACAAACCCCAGAAACAAACTTTAGGGATTCCAGCTATCC
ATTTGCCAATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGCCCTACCGCCTACGCGCGCACCCGTGGGATCTCCAGATCTCCGACCCGGCGCGCGGC
ATCCGCCCCCTCCCCACTCTCAGCTCCAGGCCCGGCCAGGTCCTGGGAAGCTGCCGCGAG
GCGGCCGTGCCTGCAGTGTGGGCGGGGGCCGGGGGCCCGAGAGGTTCCGCCGCTATCGCG
CTGGGAGCCGCAGCGGTTCCGAGCGGGGCCCAACATGGCGGAGAGAGAGGTGGAGTCCAG
CCCCCGAAAGAGGTTTGAGCAGAAAGCTGGTGCAGTTTTTGATGAAATTGTAGAGAACTG
TGGTGGTATCATGGATACAGAAATGTCTGAAGATATAGACCACAACTTAACTCCTACCCT
TGACAGCATGTCTTATGGAATGCCGAATCAAACAGGATCTGAAAATTCATTGCTGGATGA
AGATGATTATTTTTTGAACTCTGGGGATCTTGCAGGAATTCCAGTCGTTGGTAGTGACAA
TGAGGATGAACAGGATTTTAGTTCAAAGGACAATCTTGTTTCTTCAATTCATACTGATGA
TAGCTTGGAAGTAGAGAGAAGAGTCACACAGCATGAATCAGACAATGAAAATGAAATACA
GATTCAAAATAAATTAAAAAAAGACTTTCCTAAACAGTTTGATCAGGTTTCTGTCTTTAA
ATCAATACGGAAAGATTTTAGTCTAGTAAGAGAAAACAGCAAAGAGACATTTTCTGGAAA
GGAGAAAAATAGAGACCTAACTTATCATGAACGTGAAAAACGGTTGGATAAACCCCATAA
AGAGTTGGATTCAAGGTTGAAAAGCAGTTTTTTTGATAAAGCAGCTAATCAAGTTGAAGA
AACATTACATACCCATTTACCACAAACCCCAGAAACAAACTTTAGGGATTCCAGCTATCC
ATTTGCCAATAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|56206073|emb|CAI22686.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56206073|emb|CAI22686.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               137-253, - strand, RNAz p=0.998437
               

               
               419-578, - strand, RNAz p=0.80064
               

               
               699-818, + strand, RNAz p=0.735477

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               137-253, - strand, RNAz p=0.998437
               

               
               419-578, - strand, RNAz p=0.80064
               

               
               699-818, + strand, RNAz p=0.735477

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of CR936741, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of CR936741, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-253, gnl|bosTau2|chr3 (77602230-77601978)
               

               
               1-253, gnl|Hg17|chr1 (35403527-35403779)
               

               
               1-253, gnl|Mm7|chr4 (126412718-126412463)
               


               
               300-829, gnl|bosTau2|chr3 (77512439-77511910)
               

               
               300-829, gnl|Hg17|chr1 (35493619-35494145)
               

               
               300-829, gnl|Mm7|chr4 (126370670-126370144)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-253, gnl|bosTau2|chr3 (77602230-77601978)
               

               
               1-253, gnl|Hg17|chr1 (35403527-35403779)
               

               
               1-253, gnl|Mm7|chr4 (126412718-126412463)
               


               
               300-829, gnl|bosTau2|chr3 (77512439-77511910)
               

               
               300-829, gnl|Hg17|chr1 (35493619-35494145)
               

               
               300-829, gnl|Mm7|chr4 (126370670-126370144)

	137-253, - strand, RNAz p=0.998437
	419-578, - strand, RNAz p=0.80064
	699-818, + strand, RNAz p=0.735477

	1-253, gnl\|bosTau2\|chr3 (77602230-77601978)
	1-253, gnl\|Hg17\|chr1 (35403527-35403779)
	1-253, gnl\|Mm7\|chr4 (126412718-126412463)

	300-829, gnl\|bosTau2\|chr3 (77512439-77511910)
	300-829, gnl\|Hg17\|chr1 (35493619-35494145)
	300-829, gnl\|Mm7\|chr4 (126370670-126370144)