Non-Coding RNA Search

Ss1.1-LyN1-MLN01E030005.5

Sequence:


               
               TGGGGAACCATAAAGTGGAAGGATTCTCTGCTTTGCCCTTGGCTTTTGTTACCTGGAGCT
CCATCATGAGCCTTAGGGTGGACTGAAATTCTATCTGGTGGCCAAAAGTGAAAGGAAAAC
CAGGACAAAGAGATCCGCTGGGCAGGGGCGGGGCTTGCTTAGCAAGAGCGATGGAAAGCC
ACGACAATGAAGTAGCTTGTAGCTGGCTGCCTAATATGTGTAAAGCGTTGGTACAGGCAA
GATGGAGTTAATTCAATAAAATAAATATAAAATACTCTCTCCTCTGTCAGGCCGCGCTGG
AAGCGGGTCAGAGGTCACCGAGCCGCTTCACTGGCGCACTAATCGATTTGCTGTCAAGGT
GGCCTGCTGGGGTTTCAAGCCAGAGAGGAATTGAGAGGCGCTCCGGCCCAATTTCCATAA
TTGCTCACTGCCTTTAGTGTACAACCTTTTATGAAACACAAAAAATATATCATGGAATTG
TATTGATTAGCCATTGGGCTGAATAATTCACTTAGTATTTATTACCTGACCCCAAGAGGT
TAAATAAATCCACTATCTAACTTGGGTTTGTGAGAAATATTACTTATTCATTGAAATGTG
GGCTGATTATTGCACAATAGGCCTGTATCTTTGTTTCTTGATTTTGTAATCAAGGTTAAC
CCTTCCTGCATTTGGGGCCACTAAGTTGGAATAAAAAGACTTTGTCTGAATACTCCCCAA
AATAAGCCAAAGAAAATCACTGCTGAATGTAATTTTGAAGCAGTTTTTTGATCCTGAATT
GAAGTCATTTGAGTCAAGTTTCAAAATGGCCCCAAACTTTATGGATTGTGGTTAAATGTA
GACATAAACTTGGTTTTCATTGCAAACATTACATTTTATAATAACAGGCTCATTAATGAT
GATGACATCTAAGCCTATTTTTATGACATTGTTTTTGGAAGATGATCCTGTTATTCTAAA
TACTCATAAATTAGTTGTCCCAGGAAATGAGGAGGTGTTGGGGATGGGTGGGTAGGAAGA
CTCTTTTAAGTCTTAAAGATGAATATCCATGGACAGATGACTGATGTTCATCTCCCAAAG
AAGATGATTTCAAGTTACTTGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGGAACCATAAAGTGGAAGGATTCTCTGCTTTGCCCTTGGCTTTTGTTACCTGGAGCT
CCATCATGAGCCTTAGGGTGGACTGAAATTCTATCTGGTGGCCAAAAGTGAAAGGAAAAC
CAGGACAAAGAGATCCGCTGGGCAGGGGCGGGGCTTGCTTAGCAAGAGCGATGGAAAGCC
ACGACAATGAAGTAGCTTGTAGCTGGCTGCCTAATATGTGTAAAGCGTTGGTACAGGCAA
GATGGAGTTAATTCAATAAAATAAATATAAAATACTCTCTCCTCTGTCAGGCCGCGCTGG
AAGCGGGTCAGAGGTCACCGAGCCGCTTCACTGGCGCACTAATCGATTTGCTGTCAAGGT
GGCCTGCTGGGGTTTCAAGCCAGAGAGGAATTGAGAGGCGCTCCGGCCCAATTTCCATAA
TTGCTCACTGCCTTTAGTGTACAACCTTTTATGAAACACAAAAAATATATCATGGAATTG
TATTGATTAGCCATTGGGCTGAATAATTCACTTAGTATTTATTACCTGACCCCAAGAGGT
TAAATAAATCCACTATCTAACTTGGGTTTGTGAGAAATATTACTTATTCATTGAAATGTG
GGCTGATTATTGCACAATAGGCCTGTATCTTTGTTTCTTGATTTTGTAATCAAGGTTAAC
CCTTCCTGCATTTGGGGCCACTAAGTTGGAATAAAAAGACTTTGTCTGAATACTCCCCAA
AATAAGCCAAAGAAAATCACTGCTGAATGTAATTTTGAAGCAGTTTTTTGATCCTGAATT
GAAGTCATTTGAGTCAAGTTTCAAAATGGCCCCAAACTTTATGGATTGTGGTTAAATGTA
GACATAAACTTGGTTTTCATTGCAAACATTACATTTTATAATAACAGGCTCATTAATGAT
GATGACATCTAAGCCTATTTTTATGACATTGTTTTTGGAAGATGATCCTGTTATTCTAAA
TACTCATAAATTAGTTGTCCCAGGAAATGAGGAGGTGTTGGGGATGGGTGGGTAGGAAGA
CTCTTTTAAGTCTTAAAGATGAATATCCATGGACAGATGACTGATGTTCATCTCCCAAAG
AAGATGATTTCAAGTTACTTGAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               401-677, + strand, RNAz p=0.715478

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               401-677, + strand, RNAz p=0.715478

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-1104, gnl|bosTau2|chr7 (47688504-47687401)
               

               
               4-1104, gnl|Hg17|chr5 (158394455-158393353)
               

               
               4-1104, gnl|Mm7|chr11 (44639667-44640791)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-1104, gnl|bosTau2|chr7 (47688504-47687401)
               

               
               4-1104, gnl|Hg17|chr5 (158394455-158393353)
               

               
               4-1104, gnl|Mm7|chr11 (44639667-44640791)

	4-1104, gnl\|bosTau2\|chr7 (47688504-47687401)
	4-1104, gnl\|Hg17\|chr5 (158394455-158393353)
	4-1104, gnl\|Mm7\|chr11 (44639667-44640791)