Non-Coding RNA Search

Ss1.1-LyN1-MLN01F040001.5

Sequence:


               
               GGATATCCGTGACCGTTGAGAGCGTGCGGTGGGGGAAGAGGAGTGCTGAGACCCCGGAGC
AGCGGCGGCCATGGCGGATGTGACCGCCCGTAGCCTGCAGTACGAGTACAAGGCGGTGCG
TGCAGGCTCGGCGCAGGGCTCTGGGCTGGGGACCTCGGTGGGGAGCGGGAGTCTGCGGAA
GGGAGCTTCTGTCTGAAGGCCTTCGGAAGAACTGCCAAATCAGAGGGGAAGTCAGATCCG
GGCGAAGGTGTGGGTACATGATGATAAGACTAATAACCCCACTGGTGTCTGGGACGAGTG
GGATGGGCTAAGAGCTCTGCTAGGAGTGTTTGTCCCCTGTCCCCTCAGCGCTTTACCTGC
CCTCTTCCGTAAGTCACCCCCAACTTTTCCCAGGTGAGAATTATTGTGGGCAGTGTTAGG
AGCAAGGATTGTTCTACCTATTTGATTACCTCTGTCTCACGCGCAATTGTACGATGCTCT
TTCTAAGGAAAACGGTGGGGGAAGAGGAGTGCTGAGACCCCGGAGCAGCGGCGGCCATGG
CGGATGTGACCGCCCGTAGCCTGCAGTACGAGTACAAGGCGAACTCGAATCTTGTCCTCC
AAGCTGACCGCTCTCTCATTGACCGGACCCGCCGGGATGAACCCACAGGAGAGGTGCTCT
CCCTGGTTGGGAAGTTGGAAGGTACCCGTATGGGAGATAAGGCTCAACGGACCAAACCAC
AGATGCAAGAGGAAAGAAGAGCCAAGCGAAGAAAGCGTGATGAGGACCGACATGACATCA
ACAAGATGAAGGGTTACACTCTGCTCTCGGAGGGTATCGATGAGATGGTGGGCATCATCT
ATAAGCCCAAAACCAAAGAGACCCGGGAGACCTATGAAGTGCTACTCAGCTTCATCCAAG
CTGCCCTTGGTGACCAGGTGAGGAAGCCAGAGGGGAAAGCTGTGGTTTTGGAGAGGGAGA
AAGTTCCACCTGGGGGGCACCAGAAGAACTTTGTCTGTGAATTTTCCTGGGTGGGTCATA
CCAAAATGCAGAAGTAGCTCATGTTTACTGAGCACTTTATGTGGGATGGCACTTTTATGT
GTCTTCTTTCAATCCTCATGCCAGCTCTGTGATTAGGCACTATGAGTAGTTGTTTTTCAT
TTTATAGAAAAGAAGTGTGAGGTAAAGAATATTTAAGGCATTTTCCCAGAGAGGTTCGAG
AGCGTTTGACAGAGCTGGGATATGAGCCTGGGTAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATATCCGTGACCGTTGAGAGCGTGCGGTGGGGGAAGAGGAGTGCTGAGACCCCGGAGC
AGCGGCGGCCATGGCGGATGTGACCGCCCGTAGCCTGCAGTACGAGTACAAGGCGGTGCG
TGCAGGCTCGGCGCAGGGCTCTGGGCTGGGGACCTCGGTGGGGAGCGGGAGTCTGCGGAA
GGGAGCTTCTGTCTGAAGGCCTTCGGAAGAACTGCCAAATCAGAGGGGAAGTCAGATCCG
GGCGAAGGTGTGGGTACATGATGATAAGACTAATAACCCCACTGGTGTCTGGGACGAGTG
GGATGGGCTAAGAGCTCTGCTAGGAGTGTTTGTCCCCTGTCCCCTCAGCGCTTTACCTGC
CCTCTTCCGTAAGTCACCCCCAACTTTTCCCAGGTGAGAATTATTGTGGGCAGTGTTAGG
AGCAAGGATTGTTCTACCTATTTGATTACCTCTGTCTCACGCGCAATTGTACGATGCTCT
TTCTAAGGAAAACGGTGGGGGAAGAGGAGTGCTGAGACCCCGGAGCAGCGGCGGCCATGG
CGGATGTGACCGCCCGTAGCCTGCAGTACGAGTACAAGGCGAACTCGAATCTTGTCCTCC
AAGCTGACCGCTCTCTCATTGACCGGACCCGCCGGGATGAACCCACAGGAGAGGTGCTCT
CCCTGGTTGGGAAGTTGGAAGGTACCCGTATGGGAGATAAGGCTCAACGGACCAAACCAC
AGATGCAAGAGGAAAGAAGAGCCAAGCGAAGAAAGCGTGATGAGGACCGACATGACATCA
ACAAGATGAAGGGTTACACTCTGCTCTCGGAGGGTATCGATGAGATGGTGGGCATCATCT
ATAAGCCCAAAACCAAAGAGACCCGGGAGACCTATGAAGTGCTACTCAGCTTCATCCAAG
CTGCCCTTGGTGACCAGGTGAGGAAGCCAGAGGGGAAAGCTGTGGTTTTGGAGAGGGAGA
AAGTTCCACCTGGGGGGCACCAGAAGAACTTTGTCTGTGAATTTTCCTGGGTGGGTCATA
CCAAAATGCAGAAGTAGCTCATGTTTACTGAGCACTTTATGTGGGATGGCACTTTTATGT
GTCTTCTTTCAATCCTCATGCCAGCTCTGTGATTAGGCACTATGAGTAGTTGTTTTTCAT
TTTATAGAAAAGAAGTGTGAGGTAAAGAATATTTAAGGCATTTTCCCAGAGAGGTTCGAG
AGCGTTTGACAGAGCTGGGATATGAGCCTGGGTAGT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               157-274, + strand, RNAz p=0.954976
               

               
               631-749, + strand, RNAz p=0.586232

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               157-274, + strand, RNAz p=0.954976
               

               
               631-749, + strand, RNAz p=0.586232

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of AY572488, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of AY572488, +

Aligned organism(s): 22 entry(ies)

More info

Aligned organism(s): 22 entry(ies)

Help | Less info


               
               1-493, gnl|bosTau2|chr11 (1714789-1715296)
               

               
               1-493, gnl|Hg17|chr2 (96393120-96392610)
               

               
               1-493, gnl|Mm7|chr2 (126949279-126949724)
               


               
               581-749, gnl|bosTau2|chr11 (1715430-1715598)
               

               
               581-749, gnl|canFam2|chr17 (37582440-37582249)
               

               
               581-749, gnl|danRer3|chr8 (24000178-24000351)
               

               
               581-749, gnl|dasNov1|scaffold_45509 (4310-4503)
               

               
               581-749, gnl|echTel1|scaffold_290408 (123401-123591)
               

               
               581-749, gnl|fr1|chrUn (264981152-264980981)
               

               
               581-749, gnl|galGal2|chrUn (52068509-52068685)
               

               
               581-749, gnl|hg17|chr2 (96392292-96392484)
               

               
               581-749, gnl|Hg17|chr2 (96392481-96392313)
               

               
               581-749, gnl|loxAfr1|scaffold_1969 (83720-83909)
               

               
               581-749, gnl|mm7|chr2 (126950020-126949825)
               

               
               581-749, gnl|Mm7|chr2 (126949826-126949994)
               

               
               581-749, gnl|monDom2|scaffold_1 (67389592-67389783)
               

               
               581-749, gnl|oryCun1|scaffold_112392 (3723-3533)
               

               
               581-749, gnl|panTro1|chr12 (99405010-99405202)
               

               
               581-749, gnl|rheMac2|chr13 (96804811-96805003)
               

               
               581-749, gnl|rn3|chr3 (114614964-114614769)
               

               
               581-749, gnl|tetNig1|chrUn_random (33208455-33208629)
               

               
               581-749, gnl|xenTro1|scaffold_217 (20396-20588)

Aligned organism(s): 22 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-493, gnl|bosTau2|chr11 (1714789-1715296)
               

               
               1-493, gnl|Hg17|chr2 (96393120-96392610)
               

               
               1-493, gnl|Mm7|chr2 (126949279-126949724)
               


               
               581-749, gnl|bosTau2|chr11 (1715430-1715598)
               

               
               581-749, gnl|canFam2|chr17 (37582440-37582249)
               

               
               581-749, gnl|danRer3|chr8 (24000178-24000351)
               

               
               581-749, gnl|dasNov1|scaffold_45509 (4310-4503)
               

               
               581-749, gnl|echTel1|scaffold_290408 (123401-123591)
               

               
               581-749, gnl|fr1|chrUn (264981152-264980981)
               

               
               581-749, gnl|galGal2|chrUn (52068509-52068685)
               

               
               581-749, gnl|hg17|chr2 (96392292-96392484)
               

               
               581-749, gnl|Hg17|chr2 (96392481-96392313)
               

               
               581-749, gnl|loxAfr1|scaffold_1969 (83720-83909)
               

               
               581-749, gnl|mm7|chr2 (126950020-126949825)
               

               
               581-749, gnl|Mm7|chr2 (126949826-126949994)
               

               
               581-749, gnl|monDom2|scaffold_1 (67389592-67389783)
               

               
               581-749, gnl|oryCun1|scaffold_112392 (3723-3533)
               

               
               581-749, gnl|panTro1|chr12 (99405010-99405202)
               

               
               581-749, gnl|rheMac2|chr13 (96804811-96805003)
               

               
               581-749, gnl|rn3|chr3 (114614964-114614769)
               

               
               581-749, gnl|tetNig1|chrUn_random (33208455-33208629)
               

               
               581-749, gnl|xenTro1|scaffold_217 (20396-20588)

	157-274, + strand, RNAz p=0.954976
	631-749, + strand, RNAz p=0.586232

	1-493, gnl\|bosTau2\|chr11 (1714789-1715296)
	1-493, gnl\|Hg17\|chr2 (96393120-96392610)
	1-493, gnl\|Mm7\|chr2 (126949279-126949724)

	581-749, gnl\|bosTau2\|chr11 (1715430-1715598)
	581-749, gnl\|canFam2\|chr17 (37582440-37582249)
	581-749, gnl\|danRer3\|chr8 (24000178-24000351)
	581-749, gnl\|dasNov1\|scaffold_45509 (4310-4503)
	581-749, gnl\|echTel1\|scaffold_290408 (123401-123591)
	581-749, gnl\|fr1\|chrUn (264981152-264980981)
	581-749, gnl\|galGal2\|chrUn (52068509-52068685)
	581-749, gnl\|hg17\|chr2 (96392292-96392484)
	581-749, gnl\|Hg17\|chr2 (96392481-96392313)
	581-749, gnl\|loxAfr1\|scaffold_1969 (83720-83909)
	581-749, gnl\|mm7\|chr2 (126950020-126949825)
	581-749, gnl\|Mm7\|chr2 (126949826-126949994)
	581-749, gnl\|monDom2\|scaffold_1 (67389592-67389783)
	581-749, gnl\|oryCun1\|scaffold_112392 (3723-3533)
	581-749, gnl\|panTro1\|chr12 (99405010-99405202)
	581-749, gnl\|rheMac2\|chr13 (96804811-96805003)
	581-749, gnl\|rn3\|chr3 (114614964-114614769)
	581-749, gnl\|tetNig1\|chrUn_random (33208455-33208629)
	581-749, gnl\|xenTro1\|scaffold_217 (20396-20588)