Non-Coding RNA Search

Ss1.1-LyN1-MLN01F060071.5

Sequence:


               
               CAACGGGGTGGACAGATCAGGCAGCAGAACCGTGCCTGAGGAGCCAGACCCACACACCCC
TTCCCGGGACCTTTGGAGGGTAGATGTGGGGTCCCGGTCACCCTCCTGGCCAGTGCTCCC
TCTAATCTACGTGATGGGCTTGTGAAGGCGGATGCTTTCTGGGCCTCCTGCGCAGCTTGC
ACTCTGTGGATGATGGGTGACGACAGACTCTGTGAACCCGCCAAACCTGTGGAGTTTCTC
GACGTCTATCTGGGAGATAACCTGCGGCCCCACCCAGGGGTGCACCTGAGGGAGACAGGC
GACCGTCAGGACCCTCTCCAGCCTTGGGGGGAGCAGACCTGGCCTTCTTACTCTCCCGAT
TCAGTGAGGCAAGATGCTTATCCCGGGGCCTCCAGTCCGGAGCCCATGCACCTGGGGATC
GGTCCTTCACAGGATGAGGCCAGGCAGCAGTCAGAATCTTCCAGGTCACCCAGGGACAGC
CAACCCCTGGGGAGCCCAAGGCAGAGCCAGAGCACGTCCACTCAGGTGGTGTTCTGGGCG
GGCATCCTGCAGGCCCAGATGTGTGTCCTGGACCTGGAGGAGGAGCTGGAGAAGACAGAG
GGGCTCAGAGCTGAGCTGAGATGCTGCCTGCCTACAGCCCCTACCGATCTCCCCGCCTTC
CCCTCGAGCCCTGTGGCCCCCCAGGACCCAGGGCCCGCTGTGGACATGGATGTGGATGAG
GACGAGGCCTTGGGAGAAGACGGCAGCAGGCCCGAAGGGGACGACCAGAACCCGGGGTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAACGGGGTGGACAGATCAGGCAGCAGAACCGTGCCTGAGGAGCCAGACCCACACACCCC
TTCCCGGGACCTTTGGAGGGTAGATGTGGGGTCCCGGTCACCCTCCTGGCCAGTGCTCCC
TCTAATCTACGTGATGGGCTTGTGAAGGCGGATGCTTTCTGGGCCTCCTGCGCAGCTTGC
ACTCTGTGGATGATGGGTGACGACAGACTCTGTGAACCCGCCAAACCTGTGGAGTTTCTC
GACGTCTATCTGGGAGATAACCTGCGGCCCCACCCAGGGGTGCACCTGAGGGAGACAGGC
GACCGTCAGGACCCTCTCCAGCCTTGGGGGGAGCAGACCTGGCCTTCTTACTCTCCCGAT
TCAGTGAGGCAAGATGCTTATCCCGGGGCCTCCAGTCCGGAGCCCATGCACCTGGGGATC
GGTCCTTCACAGGATGAGGCCAGGCAGCAGTCAGAATCTTCCAGGTCACCCAGGGACAGC
CAACCCCTGGGGAGCCCAAGGCAGAGCCAGAGCACGTCCACTCAGGTGGTGTTCTGGGCG
GGCATCCTGCAGGCCCAGATGTGTGTCCTGGACCTGGAGGAGGAGCTGGAGAAGACAGAG
GGGCTCAGAGCTGAGCTGAGATGCTGCCTGCCTACAGCCCCTACCGATCTCCCCGCCTTC
CCCTCGAGCCCTGTGGCCCCCCAGGACCCAGGGCCCGCTGTGGACATGGATGTGGATGAG
GACGAGGCCTTGGGAGAAGACGGCAGCAGGCCCGAAGGGGACGACCAGAACCCGGGGTGG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               433-592, - strand, RNAz p=0.952911
               

               
               633-752, - strand, RNAz p=0.946419

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               433-592, - strand, RNAz p=0.952911
               

               
               633-752, - strand, RNAz p=0.946419

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               696-822, - strand, RNAmicro p=0.99905

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               696-822, - strand, RNAmicro p=0.99905

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               77-780, gnl|bosTau2|chr11 (33531317-33530614)
               

               
               77-780, gnl|Hg17|chr2 (113656152-113656939)
               

               
               77-780, gnl|Mm7|chr2 (24401331-24401976)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               77-780, gnl|bosTau2|chr11 (33531317-33530614)
               

               
               77-780, gnl|Hg17|chr2 (113656152-113656939)
               

               
               77-780, gnl|Mm7|chr2 (24401331-24401976)

	433-592, - strand, RNAz p=0.952911
	633-752, - strand, RNAz p=0.946419

	77-780, gnl\|bosTau2\|chr11 (33531317-33530614)
	77-780, gnl\|Hg17\|chr2 (113656152-113656939)
	77-780, gnl\|Mm7\|chr2 (24401331-24401976)