Non-Coding RNA Search

Ss1.1-LyN1-MLN01F060080.5

Sequence:


               
               CTCTTTCCTGAGCCTCCCTCCAGCTCTAGTCCCAACCTGAAGAGGCTACACCCGCTGGGG
TCTCAGATCACAAGAAGCCTCCCGCAATGAGAAGCCAGGAAGACTTGGCCAGAGTTTCCT
CTTAAGTTTCGTGGAGAGAGACTCAGGTATAGAAATATCCTTACTGCCACCTGACCTGAA
GCAGGAGACACCGCTAACAGCCTGGAGACCAGCCCTGCCATGTGCACCACCAGCACCTGT
GACCTGGAGGAGATCCCTCTGGATGATGATGACTCAAACAGTATGGAATTCAAAATCCTG
GAGTTCTATGTCACACACCATGTCTTCAAGAACAGCTCTGCTGTCTTCTCACCAAAGCTC
CTGAGGACAAGAAGTTTGTCCCAGAAAGGACCAGGGAGTTGGCCGGTAAAGGAGGCATGG
ACACAGGGGCCGTGGCCTTGCAGAAGTTCCCAGTCCAGTGAGAAGGCCATAAACCTTGCC
AAGAAAAAGTCTTCTTGGAGAACACTCTTCGGAGTAGCAGAGAAGGAGGAAAATTCGCAG
AGCGTGCCTACAGGGTTCCGTTTCGAGGGGCCGAGGAGAGTGGAAACTCAGAGTGGTTCT
CACAGTCAGCAATGGCCAAGGTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTTTCCTGAGCCTCCCTCCAGCTCTAGTCCCAACCTGAAGAGGCTACACCCGCTGGGG
TCTCAGATCACAAGAAGCCTCCCGCAATGAGAAGCCAGGAAGACTTGGCCAGAGTTTCCT
CTTAAGTTTCGTGGAGAGAGACTCAGGTATAGAAATATCCTTACTGCCACCTGACCTGAA
GCAGGAGACACCGCTAACAGCCTGGAGACCAGCCCTGCCATGTGCACCACCAGCACCTGT
GACCTGGAGGAGATCCCTCTGGATGATGATGACTCAAACAGTATGGAATTCAAAATCCTG
GAGTTCTATGTCACACACCATGTCTTCAAGAACAGCTCTGCTGTCTTCTCACCAAAGCTC
CTGAGGACAAGAAGTTTGTCCCAGAAAGGACCAGGGAGTTGGCCGGTAAAGGAGGCATGG
ACACAGGGGCCGTGGCCTTGCAGAAGTTCCCAGTCCAGTGAGAAGGCCATAAACCTTGCC
AAGAAAAAGTCTTCTTGGAGAACACTCTTCGGAGTAGCAGAGAAGGAGGAAAATTCGCAG
AGCGTGCCTACAGGGTTCCGTTTCGAGGGGCCGAGGAGAGTGGAAACTCAGAGTGGTTCT
CACAGTCAGCAATGGCCAAGGTCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61554036|gb|AAX46497.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61554036|gb|AAX46497.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               329-448, - strand, RNAz p=0.786523

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               329-448, - strand, RNAz p=0.786523

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               210-624, gnl|bosTau2|chr5 (58745872-58745458)
               

               
               210-624, gnl|canFam2|chr27 (37211696-37211069)
               

               
               210-624, gnl|dasNov1|scaffold_7106 (104895-104282)
               

               
               210-624, gnl|echTel1|scaffold_298536 (39838-40438)
               

               
               210-624, gnl|hg17|chr12 (12123403-12124032)
               

               
               210-624, gnl|Hg17|chr12 (12123497-12123905)
               

               
               210-624, gnl|mm7|chr6 (134436986-134437614)
               

               
               210-624, gnl|Mm7|chr6 (134437082-134437502)
               

               
               210-624, gnl|oryCun1|scaffold_75681 (1081-478)
               

               
               210-624, gnl|panTro1|chrUn_random (38374734-38375363)
               

               
               210-624, gnl|rheMac2|chr11 (12436057-12436686)
               

               
               210-624, gnl|rn3|chr4 (171554157-171554762)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               210-624, gnl|bosTau2|chr5 (58745872-58745458)
               

               
               210-624, gnl|canFam2|chr27 (37211696-37211069)
               

               
               210-624, gnl|dasNov1|scaffold_7106 (104895-104282)
               

               
               210-624, gnl|echTel1|scaffold_298536 (39838-40438)
               

               
               210-624, gnl|hg17|chr12 (12123403-12124032)
               

               
               210-624, gnl|Hg17|chr12 (12123497-12123905)
               

               
               210-624, gnl|mm7|chr6 (134436986-134437614)
               

               
               210-624, gnl|Mm7|chr6 (134437082-134437502)
               

               
               210-624, gnl|oryCun1|scaffold_75681 (1081-478)
               

               
               210-624, gnl|panTro1|chrUn_random (38374734-38375363)
               

               
               210-624, gnl|rheMac2|chr11 (12436057-12436686)
               

               
               210-624, gnl|rn3|chr4 (171554157-171554762)

	210-624, gnl\|bosTau2\|chr5 (58745872-58745458)
	210-624, gnl\|canFam2\|chr27 (37211696-37211069)
	210-624, gnl\|dasNov1\|scaffold_7106 (104895-104282)
	210-624, gnl\|echTel1\|scaffold_298536 (39838-40438)
	210-624, gnl\|hg17\|chr12 (12123403-12124032)
	210-624, gnl\|Hg17\|chr12 (12123497-12123905)
	210-624, gnl\|mm7\|chr6 (134436986-134437614)
	210-624, gnl\|Mm7\|chr6 (134437082-134437502)
	210-624, gnl\|oryCun1\|scaffold_75681 (1081-478)
	210-624, gnl\|panTro1\|chrUn_random (38374734-38375363)
	210-624, gnl\|rheMac2\|chr11 (12436057-12436686)
	210-624, gnl\|rn3\|chr4 (171554157-171554762)