Non-Coding RNA Search

Ss1.1-LyN1-MLN01F080006.5

Sequence:


               
               TATACCAAGGCACTCATGCTCCAAATTGTGCACGCGTTCAGTAATGCATGTGGCTCTTCA
CACACACGCATGGTAGAGACCGTGTACAAATACCAGAGCTAGCAAATGCAGTAAACGGCA
TGCCAGATGTCTCTGAAATTTGCAAAGAACCCAGGACCAAAAATGACAGTTAGCTCCATA
AGCCCTATAAAAGAAAAAAAAAAAAGAAGAAGAAAAAGGAAAAAAAAAAAAAAAACCAAA
AAACGCCAAAGAACAAAAGAACCTCCAGCAAAAGGAAGTGGCTATGTTTTTTTTCTATGC
ACTCAAGCCGGGGGTGGGGAAGATTTATAAAGGCATTCTATGCTGGGCAGGTTCAAGTAA
GCCTGAGTTCCTCAAGGGTTGGCTTTAGGAGCTGTTAGGAAAATTCATTGCCATGCATGA
GTCGGGGGATTGTCTTTTATTCCACTGGAAATTGTTAGCGGGGACTGCATTAGCGGCCCC
TTATCGCGCTGCCTGATAGAGAGACAGCGGGTTCACCCAAGCAATTCTGGAACCCTGATC
ACTGCCAATTAGGGGAACATTGTCTGGCTGACATAATCAAGTGAGTATAAATATATTTAT
CGTGATTGGAATGGGGAAGGGAGAGAGCAGAAAGATTGAGGCAGAAACTGCCACCCCTGG
CCTGGCTCCAGCCTGAACCTAACTTGGGGTGTCTGTCACCGGGTGCTTCATAGACGCAGT
CGCCTGCTTCTGAGGTGGACACACAGTTGGGAATTCAGGACTGGAACTGTCTTCCCCAGA
AGGGGCCCTGTCTCTCCTTATTTTTCCTCCCGGCTTCTTCCCTTTTTCATGATCACTTCT
GTGAACGCTGCACAGAGACGGGGAACCAGATGCTCCGTTGATGACATTTTAATTCTGCCC
CGTCGGCCGGCTGCCCTCACTTAGCTTATCTGCAGTTCAAAGTGATCTCCGGGAATGTCG
CTGTGACGGGACTCTTACCCTCTCTGCCTGCCTGGGTGTGCACGTCTGTCTGGCATTGGG
TTTATGTCATTGTCTCGTGGAACTTTGGCAGGAATAGCTGTGATGGGTGGGTCTCAGAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATACCAAGGCACTCATGCTCCAAATTGTGCACGCGTTCAGTAATGCATGTGGCTCTTCA
CACACACGCATGGTAGAGACCGTGTACAAATACCAGAGCTAGCAAATGCAGTAAACGGCA
TGCCAGATGTCTCTGAAATTTGCAAAGAACCCAGGACCAAAAATGACAGTTAGCTCCATA
AGCCCTATAAAAGAAAAAAAAAAAAGAAGAAGAAAAAGGAAAAAAAAAAAAAAAACCAAA
AAACGCCAAAGAACAAAAGAACCTCCAGCAAAAGGAAGTGGCTATGTTTTTTTTCTATGC
ACTCAAGCCGGGGGTGGGGAAGATTTATAAAGGCATTCTATGCTGGGCAGGTTCAAGTAA
GCCTGAGTTCCTCAAGGGTTGGCTTTAGGAGCTGTTAGGAAAATTCATTGCCATGCATGA
GTCGGGGGATTGTCTTTTATTCCACTGGAAATTGTTAGCGGGGACTGCATTAGCGGCCCC
TTATCGCGCTGCCTGATAGAGAGACAGCGGGTTCACCCAAGCAATTCTGGAACCCTGATC
ACTGCCAATTAGGGGAACATTGTCTGGCTGACATAATCAAGTGAGTATAAATATATTTAT
CGTGATTGGAATGGGGAAGGGAGAGAGCAGAAAGATTGAGGCAGAAACTGCCACCCCTGG
CCTGGCTCCAGCCTGAACCTAACTTGGGGTGTCTGTCACCGGGTGCTTCATAGACGCAGT
CGCCTGCTTCTGAGGTGGACACACAGTTGGGAATTCAGGACTGGAACTGTCTTCCCCAGA
AGGGGCCCTGTCTCTCCTTATTTTTCCTCCCGGCTTCTTCCCTTTTTCATGATCACTTCT
GTGAACGCTGCACAGAGACGGGGAACCAGATGCTCCGTTGATGACATTTTAATTCTGCCC
CGTCGGCCGGCTGCCCTCACTTAGCTTATCTGCAGTTCAAAGTGATCTCCGGGAATGTCG
CTGTGACGGGACTCTTACCCTCTCTGCCTGCCTGGGTGTGCACGTCTGTCTGGCATTGGG
TTTATGTCATTGTCTCGTGGAACTTTGGCAGGAATAGCTGTGATGGGTGGGTCTCAGAAC

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               1-190, - strand, RNAz p=0.936148
               

               
               239-340, - strand, RNAz p=0.631209
               

               
               772-875, + strand, RNAz p=0.958627

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-190, - strand, RNAz p=0.936148
               

               
               239-340, - strand, RNAz p=0.631209
               

               
               772-875, + strand, RNAz p=0.958627

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-206, gnl|bosTau2|chr5 (68214940-68214727)
               

               
               1-206, gnl|Hg17|chr22 (38646790-38647019)
               

               
               1-206, gnl|Mm7|chr15 (80686047-80686252)
               


               
               239-1064, gnl|bosTau2|chr5 (68214739-68213906)
               

               
               239-1064, gnl|Hg17|chr22 (38646989-38647845)
               

               
               239-1064, gnl|Mm7|chr15 (80686240-80687168)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-206, gnl|bosTau2|chr5 (68214940-68214727)
               

               
               1-206, gnl|Hg17|chr22 (38646790-38647019)
               

               
               1-206, gnl|Mm7|chr15 (80686047-80686252)
               


               
               239-1064, gnl|bosTau2|chr5 (68214739-68213906)
               

               
               239-1064, gnl|Hg17|chr22 (38646989-38647845)
               

               
               239-1064, gnl|Mm7|chr15 (80686240-80687168)

	1-190, - strand, RNAz p=0.936148
	239-340, - strand, RNAz p=0.631209
	772-875, + strand, RNAz p=0.958627

	1-206, gnl\|bosTau2\|chr5 (68214940-68214727)
	1-206, gnl\|Hg17\|chr22 (38646790-38647019)
	1-206, gnl\|Mm7\|chr15 (80686047-80686252)

	239-1064, gnl\|bosTau2\|chr5 (68214739-68213906)
	239-1064, gnl\|Hg17\|chr22 (38646989-38647845)
	239-1064, gnl\|Mm7\|chr15 (80686240-80687168)