Non-Coding RNA Search

Ss1.1-LyN1-MLN01G030072.5

Sequence:


               
               GATTCTGGGGTTCGTTTAGAGGTAAGTTTCGCCTTTTTGTCGGTTGGAGGGTGACATTTT
TGGCCTGGGAAACGGGTTCGGCCTAGGCTCAGTTGGGAGCCATGACTTGTGTTAAGCGGC
TGTTTTCGGGATGGGACACAGAGGTGTTTGCGGGCAACAAAAACGGTATTTTGGGGCGTT
TCCGAGCAACCCGTATTGATTGTATCTTTCTCCCTTTTGTTCCTTTTATCCCAGGTTTGA
ATTTTCTCGGAGAAAGACAGGCCAGCCACGAGGAAAAAAGAAACAAGCCGCAGCAACATC
TAAGCCCTTGAAAGGATCCTGAGAGAGGGGGGAAAGGGAAAACAGCAGCCACCAGCCCAA
CCACTTGTGTCTTCTGCCCCTTCCCACCTATCTTGCCCACCCCACCAGCCCACGCTGCTT
GGGACTTGAAATCTGTGGCCGAAGGACCGTCACCACATAACTTCAAAAATAATCAACCAC
CCTCCCTTCCCAAACCCACTCAAATTCACTCATCCAGCGTTTACTTTTTTGAATCCACTC
AGAACTTTTTTTCTACGACCCCCCTCCCTAAATGGAGTTGGGTGGGGGGGGAAATGAATA
CTGAGTTGGCCTTTATTTTTTTTTAAAGAGACTTTTTGATCCAATGAGGCCCCGCAAATA
ATTGAGTTTTGGGTCCTGGTTGGTTGTTTTATTTTTTTTCTCTAAAATTTTAACCCCCTC
CCCCCCTGAGCCCGAGGTGCTGACGTCGCAAAAAAATTGGATAGTAAGTGTCGAATTTTC
AAAAACCAGCCTTGCAACAAGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATTCTGGGGTTCGTTTAGAGGTAAGTTTCGCCTTTTTGTCGGTTGGAGGGTGACATTTT
TGGCCTGGGAAACGGGTTCGGCCTAGGCTCAGTTGGGAGCCATGACTTGTGTTAAGCGGC
TGTTTTCGGGATGGGACACAGAGGTGTTTGCGGGCAACAAAAACGGTATTTTGGGGCGTT
TCCGAGCAACCCGTATTGATTGTATCTTTCTCCCTTTTGTTCCTTTTATCCCAGGTTTGA
ATTTTCTCGGAGAAAGACAGGCCAGCCACGAGGAAAAAAGAAACAAGCCGCAGCAACATC
TAAGCCCTTGAAAGGATCCTGAGAGAGGGGGGAAAGGGAAAACAGCAGCCACCAGCCCAA
CCACTTGTGTCTTCTGCCCCTTCCCACCTATCTTGCCCACCCCACCAGCCCACGCTGCTT
GGGACTTGAAATCTGTGGCCGAAGGACCGTCACCACATAACTTCAAAAATAATCAACCAC
CCTCCCTTCCCAAACCCACTCAAATTCACTCATCCAGCGTTTACTTTTTTGAATCCACTC
AGAACTTTTTTTCTACGACCCCCCTCCCTAAATGGAGTTGGGTGGGGGGGGAAATGAATA
CTGAGTTGGCCTTTATTTTTTTTTAAAGAGACTTTTTGATCCAATGAGGCCCCGCAAATA
ATTGAGTTTTGGGTCCTGGTTGGTTGTTTTATTTTTTTTCTCTAAAATTTTAACCCCCTC
CCCCCCTGAGCCCGAGGTGCTGACGTCGCAAAAAAATTGGATAGTAAGTGTCGAATTTTC
AAAAACCAGCCTTGCAACAAGAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               221-340, - strand, RNAz p=0.825645
               

               
               501-658, + strand, RNAz p=0.793766

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               221-340, - strand, RNAz p=0.825645
               

               
               501-658, + strand, RNAz p=0.793766

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_002714, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_002714, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-804, gnl|bosTau2|chr23 (20875304-20876113)
               

               
               2-804, gnl|Hg17|chr6 (30692999-30692193)
               

               
               2-804, gnl|Mm7|chr17 (34021160-34021930)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-804, gnl|bosTau2|chr23 (20875304-20876113)
               

               
               2-804, gnl|Hg17|chr6 (30692999-30692193)
               

               
               2-804, gnl|Mm7|chr17 (34021160-34021930)

	221-340, - strand, RNAz p=0.825645
	501-658, + strand, RNAz p=0.793766

	2-804, gnl\|bosTau2\|chr23 (20875304-20876113)
	2-804, gnl\|Hg17\|chr6 (30692999-30692193)
	2-804, gnl\|Mm7\|chr17 (34021160-34021930)