Non-Coding RNA Search

Ss1.1-LyN1-MLN01G120021.5

Sequence:


               
               TGGAAGATGAGGCATGATTTTTTTCAGCTTTAATAGAACACAACAAAATAGCATCTGTGA
GATATGTAAACTTATATCTTCATACTTTAAGCACTGGAGCAAGTTACTGAGTGGAAGGAA
TATTACCTTCTTCCCAAATAGTTATCTAGAATGATTTGGTAAAATTCCTTCAGCTCAGTA
AATCTTGATTTAGCAGTATGCGATTAAGACAGTTATTTTTATTACTTTGAATTTCTTGTT
CTTTAATTGGTTTGGTCTTCCATAGTGCTTTTGCATCTCTTCCAAAGCACAAACCTGGTT
TCTGGTCAGAGGTAGCTATGGCTGTAGGTTCTCGATCTGCTGATGAATGCCAGAGGAAAT
ATTTGAAAGATTCCCAAGGAAAAGGATCCAGGAAACATGTCACCAAGAAAAACCCAGCCA
AACCCAAAGGCCAAAATGGTAACCTTTTTAGCAAATACTTTTTTCCTGTTTCTCAGTATT
GATTTCTAATCATTCATTAGATGTATTTCATATTTATTCGTGTGTCTTGTTATAAGTAGG
TTTTCATTTGTTTCTTTGTTTTTACAGTTTTATTAAAACTGTAAAGAGGCGTTCCCATCG
TGGTGCAGTGGTTAACGAATCCGACTACAAACCATGAGGTTGCGGGTTCGGTCCCTGCCC
TTGCTCAGTGGTTTAACGATCTGGCGTTGCCGTGAGCTGTGGTGTAGGTTGCAGACACGG
CTCGGATCCTGCGTTGCTGTGGCTCTGGCGTAGGCCAGTGGCTACAGCTCCGATTAGACC
CCTAGCCTGGGAACCTCCATATGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGAAGATGAGGCATGATTTTTTTCAGCTTTAATAGAACACAACAAAATAGCATCTGTGA
GATATGTAAACTTATATCTTCATACTTTAAGCACTGGAGCAAGTTACTGAGTGGAAGGAA
TATTACCTTCTTCCCAAATAGTTATCTAGAATGATTTGGTAAAATTCCTTCAGCTCAGTA
AATCTTGATTTAGCAGTATGCGATTAAGACAGTTATTTTTATTACTTTGAATTTCTTGTT
CTTTAATTGGTTTGGTCTTCCATAGTGCTTTTGCATCTCTTCCAAAGCACAAACCTGGTT
TCTGGTCAGAGGTAGCTATGGCTGTAGGTTCTCGATCTGCTGATGAATGCCAGAGGAAAT
ATTTGAAAGATTCCCAAGGAAAAGGATCCAGGAAACATGTCACCAAGAAAAACCCAGCCA
AACCCAAAGGCCAAAATGGTAACCTTTTTAGCAAATACTTTTTTCCTGTTTCTCAGTATT
GATTTCTAATCATTCATTAGATGTATTTCATATTTATTCGTGTGTCTTGTTATAAGTAGG
TTTTCATTTGTTTCTTTGTTTTTACAGTTTTATTAAAACTGTAAAGAGGCGTTCCCATCG
TGGTGCAGTGGTTAACGAATCCGACTACAAACCATGAGGTTGCGGGTTCGGTCCCTGCCC
TTGCTCAGTGGTTTAACGATCTGGCGTTGCCGTGAGCTGTGGTGTAGGTTGCAGACACGG
CTCGGATCCTGCGTTGCTGTGGCTCTGGCGTAGGCCAGTGGCTACAGCTCCGATTAGACC
CCTAGCCTGGGAACCTCCATATGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|56966850|pdb|1WGX|A

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56966850|pdb|1WGX|A

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               100-209, + strand, RNAz p=0.999992

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               100-209, + strand, RNAz p=0.999992

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-549, gnl|bosTau2|chr21 (37304263-37303706)
               

               
               1-549, gnl|Hg17|chr14 (44757684-44757128)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-549, gnl|bosTau2|chr21 (37304263-37303706)
               

               
               1-549, gnl|Hg17|chr14 (44757684-44757128)

	1-549, gnl\|bosTau2\|chr21 (37304263-37303706)
	1-549, gnl\|Hg17\|chr14 (44757684-44757128)