Non-Coding RNA Search

Ss1.1-LyN1-MLN01H050095.5

Sequence:


               
               AGTGGGCCGATTTTATCCTGACTAACCAAATTATTTTCCGTTAGGAGTGAAAAATTACTA
CAGTTTTGGGTGTCATCGCCCTCACTTTTCAATGTTCAAGTATTCCTGTGACCGAACTAT
TGAGAAGAGAGTAATAGAGACTCTAAACTTCTTTTGTGACTTATGGGGATTCAGAGTTAG
TAGGAGGAATGAAGGTACCTGTCGCAGTGTTTTATAATGTGGACCATCCCATGCATCTTG
TAAGCCTGTGCTCCACTCATTTGGGTTTGGTTCCCTTGTGATTTTAGTATTGAATACTTC
ATTTCCTTTGCTTTATTCATTTCGGGATTTCTTTAAAGATTAAAAAACTCTTCATGTGAG
GAGATTTTATTTCTCTTCCCTGTTCCATTCATCAGACAATGTTTCTCATGGTCCAGTGAC
GTCTGAGACAGAAAAGAATGAAACTTTTCTCCCCTTCGGCATTCCATTATCATTTCGTTC
TCCATCTCCTCTTGTGTCTCTTCAGGCTGTCAAGGAAAGGTAAACGAATTAGTCCTGTCA
TTTAATCCCATTTCTCATTTTACCTCAGATGTCATATTAGGTGGTTTTGCACTGAGGATG
GAAAGCTATTTTGAATGAGGAAAAAGAAAGTCTCTAGATTATTCCTCATAGAGCTTGTTA
TGAAGCTGTTTGTTTCTTATTTCAATCTTGGGAAGTTTAGTTTTCCTCTTTGTTTGAGTA
CATGAATATTTGAGTTGTTAAAAATGTGTTCCCCACCCCCAGACTAAGCAAAAGTTTAAA
AGTCTGTTTTTTCTTCATCTCTGATAAGACCAGTTAACACATACCGGCCATTATTTAATC
ATTTCTCAATTTGGGCTGAGAATTGGAGACTCTTCAGAAGTCCTTCCATCGATTTTTCCA
TGGGCTCAGGATGGACATTTGACTTTGAAAGAGAAGACTTTGTGCAGCTATTTAACTGTT
AAATTTGAGTCTTTCTGGATATAAAATTTGTTTTTTAAGAAGTTTATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGGGCCGATTTTATCCTGACTAACCAAATTATTTTCCGTTAGGAGTGAAAAATTACTA
CAGTTTTGGGTGTCATCGCCCTCACTTTTCAATGTTCAAGTATTCCTGTGACCGAACTAT
TGAGAAGAGAGTAATAGAGACTCTAAACTTCTTTTGTGACTTATGGGGATTCAGAGTTAG
TAGGAGGAATGAAGGTACCTGTCGCAGTGTTTTATAATGTGGACCATCCCATGCATCTTG
TAAGCCTGTGCTCCACTCATTTGGGTTTGGTTCCCTTGTGATTTTAGTATTGAATACTTC
ATTTCCTTTGCTTTATTCATTTCGGGATTTCTTTAAAGATTAAAAAACTCTTCATGTGAG
GAGATTTTATTTCTCTTCCCTGTTCCATTCATCAGACAATGTTTCTCATGGTCCAGTGAC
GTCTGAGACAGAAAAGAATGAAACTTTTCTCCCCTTCGGCATTCCATTATCATTTCGTTC
TCCATCTCCTCTTGTGTCTCTTCAGGCTGTCAAGGAAAGGTAAACGAATTAGTCCTGTCA
TTTAATCCCATTTCTCATTTTACCTCAGATGTCATATTAGGTGGTTTTGCACTGAGGATG
GAAAGCTATTTTGAATGAGGAAAAAGAAAGTCTCTAGATTATTCCTCATAGAGCTTGTTA
TGAAGCTGTTTGTTTCTTATTTCAATCTTGGGAAGTTTAGTTTTCCTCTTTGTTTGAGTA
CATGAATATTTGAGTTGTTAAAAATGTGTTCCCCACCCCCAGACTAAGCAAAAGTTTAAA
AGTCTGTTTTTTCTTCATCTCTGATAAGACCAGTTAACACATACCGGCCATTATTTAATC
ATTTCTCAATTTGGGCTGAGAATTGGAGACTCTTCAGAAGTCCTTCCATCGATTTTTCCA
TGGGCTCAGGATGGACATTTGACTTTGAAAGAGAAGACTTTGTGCAGCTATTTAACTGTT
AAATTTGAGTCTTTCTGGATATAAAATTTGTTTTTTAAGAAGTTTATA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               595-748, + strand, RNAz p=0.9982

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               595-748, + strand, RNAz p=0.9982

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-1002, gnl|bosTau2|chr29 (18510092-18511097)
               

               
               1-1002, gnl|Hg17|chr11 (18274640-18273667)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1002, gnl|bosTau2|chr29 (18510092-18511097)
               

               
               1-1002, gnl|Hg17|chr11 (18274640-18273667)

	1-1002, gnl\|bosTau2\|chr29 (18510092-18511097)
	1-1002, gnl\|Hg17\|chr11 (18274640-18273667)