Non-Coding RNA Search

Ss1.1-LyN1-MLN01H070040.5

Sequence:


               
               CTCCCGAGGCCCGCTCGGTCCGTTACCCCCGTGGAATGGCCTCACCCCTTCGGGGAAAGC
CCTCGCGGCCCCGGGCGGCGGCCGCCCGCTACGAGGAGACGTCGACGGTACGCGTAGAGA
CCTCGTCCCACCGCGTGGAGACATCCTCCCGCCAGGTGCAGACGTCCTCCCGGCGGGTGG
AGACCACCCAGCACTGCAGCGAGGGGCCCTCCGTCTCCCCCTCTGGGAAACGGCTCCCTC
GCGTCGTCGAGGTGTCCCAGCACGTGGAAACCTGGCAGCGCACGGAAACAGCCTCCCGCC
GCGCCAGGGCCTCGTGCCTGCGGGTGGAGACGACTCTGCACCGCGTAGAGAGCCCGCCGC
GGCAGGAGCAGCCGGCAGGCCGCCAGAATGTCCAAAAGGCCCCATGAGATGCTTCCTTCT
CCAGGGCCACGACAGGGCCATGGCCCGTGGCCAGTGCAGATCTGCCTCCAGTTCGCAGCC
GGCCTGCTGCCAGGTGGACCGATTCCCTTTGGTTTCCTGGAAACAGTCCACAATCCACAA
ATCAATGTAAGAAAGAGCCAAGCTGTGGTTTCAGGACTCAGCCAACATTCACTGACCCAG
CTGCACCTTGGACTATCCTGCCTTTGACCCTGTGAACTGTTTTAACTTGAAACCAGCACA
AAAAGTTCCGGGCCCCGGATACTGTATGAATTGAGTCGATGGACAAAGAGGCTCTTTGAA
CCTCTCAGACAGACTGACCTTCCCATTGACTGAGAAACCAGACCTCGGATAAGTGAATTC
ACCTCTCTGGGCCTCACCGCCCCCACTGAAAATGACATCTTTGGACTAATCTTTAGATCT
GTGACTCCCAGAGTGAGAAATTGCAGACACTGCTGATGTGCAAGATTACTTCAGGAGGCA
GAACCAACCCCTGGTGACAGAAATCAGATAGTGGTTGCTTGAAGAAGGTACAGACTCCTG
GAAGGGACAAGAGAAGCTTCTTAAGCCCCACCTACCACGCAGCTGCTGTGGACATCCCGG
TTCCATAATGGACGAAGAAGGCCAATTTTACACTTAAGGTCTGTGCATTTTGCTGAATTT
AATCGTATCTCAATTTAAATTTTAACTATTGAATGAGGGGAAAAGGTCGAACTTAATATG
TCCTGAAGTGGAATACTCTCCAACTAAATTAAGGAGGAGGAGTGGAAACAAGGGCAGGAA
ATGTATGTAGTTTACTCCCGGTTTGACAAAGAGGACATGATTCTAGCACCTAAACTTGCA
GACGGTCTGCCCTCCGAATCTGTGAGTTCTGCATCTATGGATTCAACCAGTCACCATACA
GGACCACGGATTAGGGAGGGTCAACTATGCGAGGCCATTTTACATAGGGAACTTGAGCAT
CCACAAATTTTGGTACCCATGGGGGTCCTGAAACCAATTCCCAAAGGCCGAATGTATATG
TAGCATTTCTGCAAGCACATGTAAGAAACTGTTGGACAGTGGTTGCCCTTCTGGAGGGGC
ATGGAGGTCTCAAAGGCTGATCCTGGGAGTTCCTGTTGTGGCTCAGTGGTTAACGAACCC
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------AAAAAAAAAAAAAAAGACAAATGTCGAAATCTGATC
CTGGAGGGACAGGTCTCCATACTTTTTTGTGCTATTGGAATTTCTTTCAACTTTTTAGAT
ATAAAAATAGTTAAAATGTCTTGAGTAACAGAGCATTCTGAGATTGAATTGTCCTATTTC
TCAACCCCTGGTGGCTGGACGCAGGGACATAAATGCTGCTCTANAGACTGCCCAGGAGCA
GCCAGTGTCTCTTTGCTANGTTCTAAATCTCACGCN

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCCGAGGCCCGCTCGGTCCGTTACCCCCGTGGAATGGCCTCACCCCTTCGGGGAAAGC
CCTCGCGGCCCCGGGCGGCGGCCGCCCGCTACGAGGAGACGTCGACGGTACGCGTAGAGA
CCTCGTCCCACCGCGTGGAGACATCCTCCCGCCAGGTGCAGACGTCCTCCCGGCGGGTGG
AGACCACCCAGCACTGCAGCGAGGGGCCCTCCGTCTCCCCCTCTGGGAAACGGCTCCCTC
GCGTCGTCGAGGTGTCCCAGCACGTGGAAACCTGGCAGCGCACGGAAACAGCCTCCCGCC
GCGCCAGGGCCTCGTGCCTGCGGGTGGAGACGACTCTGCACCGCGTAGAGAGCCCGCCGC
GGCAGGAGCAGCCGGCAGGCCGCCAGAATGTCCAAAAGGCCCCATGAGATGCTTCCTTCT
CCAGGGCCACGACAGGGCCATGGCCCGTGGCCAGTGCAGATCTGCCTCCAGTTCGCAGCC
GGCCTGCTGCCAGGTGGACCGATTCCCTTTGGTTTCCTGGAAACAGTCCACAATCCACAA
ATCAATGTAAGAAAGAGCCAAGCTGTGGTTTCAGGACTCAGCCAACATTCACTGACCCAG
CTGCACCTTGGACTATCCTGCCTTTGACCCTGTGAACTGTTTTAACTTGAAACCAGCACA
AAAAGTTCCGGGCCCCGGATACTGTATGAATTGAGTCGATGGACAAAGAGGCTCTTTGAA
CCTCTCAGACAGACTGACCTTCCCATTGACTGAGAAACCAGACCTCGGATAAGTGAATTC
ACCTCTCTGGGCCTCACCGCCCCCACTGAAAATGACATCTTTGGACTAATCTTTAGATCT
GTGACTCCCAGAGTGAGAAATTGCAGACACTGCTGATGTGCAAGATTACTTCAGGAGGCA
GAACCAACCCCTGGTGACAGAAATCAGATAGTGGTTGCTTGAAGAAGGTACAGACTCCTG
GAAGGGACAAGAGAAGCTTCTTAAGCCCCACCTACCACGCAGCTGCTGTGGACATCCCGG
TTCCATAATGGACGAAGAAGGCCAATTTTACACTTAAGGTCTGTGCATTTTGCTGAATTT
AATCGTATCTCAATTTAAATTTTAACTATTGAATGAGGGGAAAAGGTCGAACTTAATATG
TCCTGAAGTGGAATACTCTCCAACTAAATTAAGGAGGAGGAGTGGAAACAAGGGCAGGAA
ATGTATGTAGTTTACTCCCGGTTTGACAAAGAGGACATGATTCTAGCACCTAAACTTGCA
GACGGTCTGCCCTCCGAATCTGTGAGTTCTGCATCTATGGATTCAACCAGTCACCATACA
GGACCACGGATTAGGGAGGGTCAACTATGCGAGGCCATTTTACATAGGGAACTTGAGCAT
CCACAAATTTTGGTACCCATGGGGGTCCTGAAACCAATTCCCAAAGGCCGAATGTATATG
TAGCATTTCTGCAAGCACATGTAAGAAACTGTTGGACAGTGGTTGCCCTTCTGGAGGGGC
ATGGAGGTCTCAAAGGCTGATCCTGGGAGTTCCTGTTGTGGCTCAGTGGTTAACGAACCC
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------AAAAAAAAAAAAAAAGACAAATGTCGAAATCTGATC
CTGGAGGGACAGGTCTCCATACTTTTTTGTGCTATTGGAATTTCTTTCAACTTTTTAGAT
ATAAAAATAGTTAAAATGTCTTGAGTAACAGAGCATTCTGAGATTGAATTGTCCTATTTC
TCAACCCCTGGTGGCTGGACGCAGGGACATAAATGCTGCTCTANAGACTGCCCAGGAGCA
GCCAGTGTCTCTTTGCTANGTTCTAAATCTCACGCN

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q8BGJ3_MOUSE

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q8BGJ3_MOUSE

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               387-502, - strand, RNAz p=0.629859

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               387-502, - strand, RNAz p=0.629859

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               242-396, - strand, RNAmicro p=0.997883

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               242-396, - strand, RNAmicro p=0.997883

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-732, gnl|bosTau2|chr19 (19817270-19816536)
               

               
               1-732, gnl|Hg17|chr17 (6495922-6496637)
               

               
               1-732, gnl|Mm7|chr11 (72296897-72297575)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-732, gnl|bosTau2|chr19 (19817270-19816536)
               

               
               1-732, gnl|Hg17|chr17 (6495922-6496637)
               

               
               1-732, gnl|Mm7|chr11 (72296897-72297575)

	1-732, gnl\|bosTau2\|chr19 (19817270-19816536)
	1-732, gnl\|Hg17\|chr17 (6495922-6496637)
	1-732, gnl\|Mm7\|chr11 (72296897-72297575)