Ss1.1-LyN1-MLN01H070082.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTCGAGCCTTGGGGTTGGGCGATAAACAGGCCGTGGCCAAGGAGGAGGGGGGAGGGGGCG TTCGCTCTGCCGGGACTTCTCACAGACACCCCCTCCTTGTTATTTTAGGTGTGGTTTGGT CCAGATGTGGGGTTCCGGTAGCGGGTTTGAGATTAATCTATTGTGAAAGGGGAAAGTAGC TCCGGCGGAAAGCGGTTAAATCTGCGGAGAGGCTTCGAGACGGGAGTTCTCCCCCATGCC AACCGAATGGTGTGGCCCTGAGTTGGTCCGGGAGCCGGCCCGACGTGTCTGAGAGAGGCC CCAGAGGGGGCGGGGAGGTGGCCCGCGGAACGCGGGTTCTGTGAAGAGACGTGGGGAAGA TTCGACTCCGAGAAAAGGAAGATCCCGATTGAAAGGGAGGGAGGCCGCTGAGGGGGCGGG GGCTGCCAAGATGGCGTCTGCCTCGTCTGGGTCGTCGGCGGTCGGGTCTTCACCCGTGGA TTCCGGGGTCCCTCCCTGCACCTCGTCCTCAGCGTCTGGAATCAAGAGACCCATGGCATC TGAGGTGCTTTATGCCTCTGGCATGCCCATGAAGAAAATAGGCCACCGAGGTGTTGATTC CTCAGGAGAGACGTTGCCGGTAAGGACAACCTCATCAGCCTTAAAAGGTGCCATCCAGTT AGGCATTACTCACACTGTGGGGAGCCTGAGTACCAAACCAGAACGTGATGTCCTCATGCA AGACTTCTATGTGGTGGAGAGTATCTTCTTCCCGAGTTGAAGGGAGCAACTGACCCTGCT CATCACTACAATGACTTTCGGTTCAAGACTTATGNACNGGTTGCCTTCCGCTACTTTCGG GAGTTATTTGGTATCCGGCTGATG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTCGAGCCTTGGGGTTGGGCGATAAACAGGCCGTGGCCAAGGAGGAGGGGGGAGGGGGCG TTCGCTCTGCCGGGACTTCTCACAGACACCCCCTCCTTGTTATTTTAGGTGTGGTTTGGT CCAGATGTGGGGTTCCGGTAGCGGGTTTGAGATTAATCTATTGTGAAAGGGGAAAGTAGC TCCGGCGGAAAGCGGTTAAATCTGCGGAGAGGCTTCGAGACGGGAGTTCTCCCCCATGCC AACCGAATGGTGTGGCCCTGAGTTGGTCCGGGAGCCGGCCCGACGTGTCTGAGAGAGGCC CCAGAGGGGGCGGGGAGGTGGCCCGCGGAACGCGGGTTCTGTGAAGAGACGTGGGGAAGA TTCGACTCCGAGAAAAGGAAGATCCCGATTGAAAGGGAGGGAGGCCGCTGAGGGGGCGGG GGCTGCCAAGATGGCGTCTGCCTCGTCTGGGTCGTCGGCGGTCGGGTCTTCACCCGTGGA TTCCGGGGTCCCTCCCTGCACCTCGTCCTCAGCGTCTGGAATCAAGAGACCCATGGCATC TGAGGTGCTTTATGCCTCTGGCATGCCCATGAAGAAAATAGGCCACCGAGGTGTTGATTC CTCAGGAGAGACGTTGCCGGTAAGGACAACCTCATCAGCCTTAAAAGGTGCCATCCAGTT AGGCATTACTCACACTGTGGGGAGCCTGAGTACCAAACCAGAACGTGATGTCCTCATGCA AGACTTCTATGTGGTGGAGAGTATCTTCTTCCCGAGTTGAAGGGAGCAACTGACCCTGCT CATCACTACAATGACTTTCGGTTCAAGACTTATGNACNGGTTGCCTTCCGCTACTTTCGG GAGTTATTTGGTATCCGGCTGATG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 295-454, - strand, RNAz p=0.618635 | |
| 370-489, + strand, RNAz p=0.974565 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 295-454, - strand, RNAz p=0.618635 | |
| 370-489, + strand, RNAz p=0.974565 |
| Aligned organism(s): 68 entry(ies) | More info |
| Aligned organism(s): 68 entry(ies) | Help | Less info |
| 96-512, gnl|bosTau2|chr3 (16359842-16359431) | |
| 96-512, gnl|canFam2|chr17 (63336030-63336311) | |
| 96-512, gnl|dasNov1|scaffold_77723 (298-5) | |
| 96-512, gnl|echTel1|scaffold_312232 (43353-43065) | |
| 96-512, gnl|hg17|chr1 (147984213-147984500) | |
| 96-512, gnl|Hg17|chr1 (147984212-147984630) | |
| 96-512, gnl|loxAfr1|scaffold_5758 (69176-68878) | |
| 96-512, gnl|mm7|chr3 (94980709-94980448) | |
| 96-512, gnl|Mm7|chr3 (94980707-94980325) | |
| 96-512, gnl|monDom2|scaffold_44 (4400949-4401242) | |
| 96-512, gnl|oryCun1|scaffold_105442 (3976-3690) | |
| 96-512, gnl|panTro1|chr1 (129722787-129723080) | |
| 96-512, gnl|rheMac2|chr1 (129627223-129627511) | |
| 96-512, gnl|rn3|chr2 (189966742-189966481) | |
| 625-756, gnl|bosTau2|chr3 (16335217-16335086) | |
| 625-756, gnl|canFam2|chr17 (63360013-63360098) | |
| 625-756, gnl|danRer3|chrUn (118720548-118720633) | |
| 625-756, gnl|dasNov1|scaffold_138947 (510-595) | |
| 625-756, gnl|echTel1|scaffold_296939 (86235-86155) | |
| 625-756, gnl|fr1|chrUn (199761259-199761344) | |
| 625-756, gnl|galGal2|chrUn (96981682-96981762) | |
| 625-756, gnl|Hg17|chr1 (148017219-148017350) | |
| 625-756, gnl|hg17|chr7_random (98821-98906) | |
| 625-756, gnl|loxAfr1|scaffold_60325 (12994-13074) | |
| 625-756, gnl|mm7|chr3 (94948075-94947990) | |
| 625-756, gnl|Mm7|chr3 (94948073-94947942) | |
| 625-756, gnl|monDom2|scaffold_44 (4424196-4424281) | |
| 625-756, gnl|oryCun1|scaffold_201322 (13050-12978) | |
| 625-756, gnl|panTro1|chr5 (8306240-8306322) | |
| 625-756, gnl|rheMac2|chr3 (196308772-196308855) | |
| 625-756, gnl|rn3|chr2 (189939400-189939315) | |
| 625-756, gnl|tetNig1|chr1_random (3136652-3136567) | |
| 625-756, gnl|xenTro1|scaffold_1426 (10953-10868) | |
| 758-864, gnl|bosTau2|chr3 (16334668-16334559) | |
| 758-864, gnl|canFam2|chr17 (63360543-63360694) | |
| 758-864, gnl|canFam2|chr17 (63360689-63360572) | |
| 758-864, gnl|danRer3|chrUn (118721457-118721604) | |
| 758-864, gnl|danRer3|chrUn (118721599-118721481) | |
| 758-864, gnl|dasNov1|scaffold_138947 (967-1113) | |
| 758-864, gnl|dasNov1|scaffold_138947 (1107-991) | |
| 758-864, gnl|echTel1|scaffold_296939 (85557-85405) | |
| 758-864, gnl|echTel1|scaffold_296939 (85410-85527) | |
| 758-864, gnl|fr1|chrUn (156439748-156439890) | |
| 758-864, gnl|fr1|chrUn (156439885-156439767) | |
| 758-864, gnl|galGal2|chrUn (96981211-96981372) | |
| 758-864, gnl|galGal2|chrUn (96981367-96981249) | |
| 758-864, gnl|hg17|chr1 (148017769-148017920) | |
| 758-864, gnl|Hg17|chr1 (148017797-148017906) | |
| 758-864, gnl|hg17|chr10 (95710818-95710936) | |
| 758-864, gnl|loxAfr1|scaffold_5758 (39635-39484) | |
| 758-864, gnl|loxAfr1|scaffold_5758 (39489-39607) | |
| 758-864, gnl|mm7|chr3 (94946500-94946348) | |
| 758-864, gnl|mm7|chr3 (94946353-94946471) | |
| 758-864, gnl|Mm7|chr3 (94946469-94946360) | |
| 758-864, gnl|monDom2|scaffold_44 (4425228-4425380) | |
| 758-864, gnl|monDom2|scaffold_44 (4425375-4425257) | |
| 758-864, gnl|oryCun1|scaffold_203128 (53366-53215) | |
| 758-864, gnl|oryCun1|scaffold_203128 (53220-53337) | |
| 758-864, gnl|panTro1|chr1 (129756567-129756718) | |
| 758-864, gnl|panTro1|chr8 (97468131-97468249) | |
| 758-864, gnl|rheMac2|chr1 (129660450-129660601) | |
| 758-864, gnl|rheMac2|chr1 (129660596-129660479) | |
| 758-864, gnl|rn3|chr2 (189938175-189938022) | |
| 758-864, gnl|rn3|chr2 (189938027-189938145) | |
| 758-864, gnl|tetNig1|chr21_random (2435331-2435188) | |
| 758-864, gnl|tetNig1|chr21_random (2435193-2435310) | |
| 758-864, gnl|xenTro1|scaffold_1426 (10772-10643) | |
| 758-864, gnl|xenTro1|scaffold_1426 (10648-10766) |
| Aligned organism(s): 68 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 96-512, gnl|bosTau2|chr3 (16359842-16359431) | |
| 96-512, gnl|canFam2|chr17 (63336030-63336311) | |
| 96-512, gnl|dasNov1|scaffold_77723 (298-5) | |
| 96-512, gnl|echTel1|scaffold_312232 (43353-43065) | |
| 96-512, gnl|hg17|chr1 (147984213-147984500) | |
| 96-512, gnl|Hg17|chr1 (147984212-147984630) | |
| 96-512, gnl|loxAfr1|scaffold_5758 (69176-68878) | |
| 96-512, gnl|mm7|chr3 (94980709-94980448) | |
| 96-512, gnl|Mm7|chr3 (94980707-94980325) | |
| 96-512, gnl|monDom2|scaffold_44 (4400949-4401242) | |
| 96-512, gnl|oryCun1|scaffold_105442 (3976-3690) | |
| 96-512, gnl|panTro1|chr1 (129722787-129723080) | |
| 96-512, gnl|rheMac2|chr1 (129627223-129627511) | |
| 96-512, gnl|rn3|chr2 (189966742-189966481) | |
| 625-756, gnl|bosTau2|chr3 (16335217-16335086) | |
| 625-756, gnl|canFam2|chr17 (63360013-63360098) | |
| 625-756, gnl|danRer3|chrUn (118720548-118720633) | |
| 625-756, gnl|dasNov1|scaffold_138947 (510-595) | |
| 625-756, gnl|echTel1|scaffold_296939 (86235-86155) | |
| 625-756, gnl|fr1|chrUn (199761259-199761344) | |
| 625-756, gnl|galGal2|chrUn (96981682-96981762) | |
| 625-756, gnl|Hg17|chr1 (148017219-148017350) | |
| 625-756, gnl|hg17|chr7_random (98821-98906) | |
| 625-756, gnl|loxAfr1|scaffold_60325 (12994-13074) | |
| 625-756, gnl|mm7|chr3 (94948075-94947990) | |
| 625-756, gnl|Mm7|chr3 (94948073-94947942) | |
| 625-756, gnl|monDom2|scaffold_44 (4424196-4424281) | |
| 625-756, gnl|oryCun1|scaffold_201322 (13050-12978) | |
| 625-756, gnl|panTro1|chr5 (8306240-8306322) | |
| 625-756, gnl|rheMac2|chr3 (196308772-196308855) | |
| 625-756, gnl|rn3|chr2 (189939400-189939315) | |
| 625-756, gnl|tetNig1|chr1_random (3136652-3136567) | |
| 625-756, gnl|xenTro1|scaffold_1426 (10953-10868) | |
| 758-864, gnl|bosTau2|chr3 (16334668-16334559) | |
| 758-864, gnl|canFam2|chr17 (63360543-63360694) | |
| 758-864, gnl|canFam2|chr17 (63360689-63360572) | |
| 758-864, gnl|danRer3|chrUn (118721457-118721604) | |
| 758-864, gnl|danRer3|chrUn (118721599-118721481) | |
| 758-864, gnl|dasNov1|scaffold_138947 (967-1113) | |
| 758-864, gnl|dasNov1|scaffold_138947 (1107-991) | |
| 758-864, gnl|echTel1|scaffold_296939 (85557-85405) | |
| 758-864, gnl|echTel1|scaffold_296939 (85410-85527) | |
| 758-864, gnl|fr1|chrUn (156439748-156439890) | |
| 758-864, gnl|fr1|chrUn (156439885-156439767) | |
| 758-864, gnl|galGal2|chrUn (96981211-96981372) | |
| 758-864, gnl|galGal2|chrUn (96981367-96981249) | |
| 758-864, gnl|hg17|chr1 (148017769-148017920) | |
| 758-864, gnl|Hg17|chr1 (148017797-148017906) | |
| 758-864, gnl|hg17|chr10 (95710818-95710936) | |
| 758-864, gnl|loxAfr1|scaffold_5758 (39635-39484) | |
| 758-864, gnl|loxAfr1|scaffold_5758 (39489-39607) | |
| 758-864, gnl|mm7|chr3 (94946500-94946348) | |
| 758-864, gnl|mm7|chr3 (94946353-94946471) | |
| 758-864, gnl|Mm7|chr3 (94946469-94946360) | |
| 758-864, gnl|monDom2|scaffold_44 (4425228-4425380) | |
| 758-864, gnl|monDom2|scaffold_44 (4425375-4425257) | |
| 758-864, gnl|oryCun1|scaffold_203128 (53366-53215) | |
| 758-864, gnl|oryCun1|scaffold_203128 (53220-53337) | |
| 758-864, gnl|panTro1|chr1 (129756567-129756718) | |
| 758-864, gnl|panTro1|chr8 (97468131-97468249) | |
| 758-864, gnl|rheMac2|chr1 (129660450-129660601) | |
| 758-864, gnl|rheMac2|chr1 (129660596-129660479) | |
| 758-864, gnl|rn3|chr2 (189938175-189938022) | |
| 758-864, gnl|rn3|chr2 (189938027-189938145) | |
| 758-864, gnl|tetNig1|chr21_random (2435331-2435188) | |
| 758-864, gnl|tetNig1|chr21_random (2435193-2435310) | |
| 758-864, gnl|xenTro1|scaffold_1426 (10772-10643) | |
| 758-864, gnl|xenTro1|scaffold_1426 (10648-10766) |