Non-Coding RNA Search

Ss1.1-LyN1-MLN01H120070.5

Sequence:


               
               GAAGAAAGGAAAGAAAGAAGCGGATGGAGGATGTTGGCAGAGTATGTCTGGGTGTTGCTG
GCATCCCTCAAACCACCGGGTGGAGACTGGGTTGTAGGGTTCAGAGCAGGGCTGGCGAGG
CCGGTGAGGAGGCCTGTGGTCGCCCAGGCAAGGATGTGTGCCCTCCCTGCCAGGGCTGTG
GAAGGGCAGGGGCTTCCCACCACGAGTGGGCTGCAAGGAAGGCTTCCTGGAGGCAGTGTG
GGTGAGCGCAGCCTTGAGCGTGACAGGAAGATAAGTGTGGAGATGAGGAGGCCCTGTGGG
ACCTGGAGGACAAGCCTGGGCAGAGGTGCCGCAGTGGGCTGAGCCTGGTCTGGTGCTGGC
AGGAGCTGTGTAGCCTACTGGCTGGCGCAGGGCTGCAGCCTGGCCCGACCCTGGCTCTGA
CCCCCCTCTCTGCTGGAGAGAGCCCTGTAGCACCATCTGGATTCTTTCCTCTGATCAAGA
GGGGCCTGAGCTCTGGCTGGATCCAGTTCTAACACTCCTCCTAACCCTGCCCCTGCTGTG
TGACCATCACTCACCCTCTCTGAGCCACACATGGGATAATAACATTTCTCTGATGGAATC
AAGCGAGTTAATAAATGTGAAGTGCCTGCAGGTACAAGACTCATTAGAGAGTAATTTCTT
TTCCTGTCATCCGTCCACAGTCTCACTGCAGAAAAATAGTGTGTTAAAAGAAGAAACTCC
CAGAGTTCCCTGGTGGCTCCATGGGTTAAGGACCTGGCATTGGCTGTGGCTCAGGTCACT
GCTATGATGTGGGTTTGATCCGCTGGCCTGAGAACTTCCACATATTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGAAAGGAAAGAAAGAAGCGGATGGAGGATGTTGGCAGAGTATGTCTGGGTGTTGCTG
GCATCCCTCAAACCACCGGGTGGAGACTGGGTTGTAGGGTTCAGAGCAGGGCTGGCGAGG
CCGGTGAGGAGGCCTGTGGTCGCCCAGGCAAGGATGTGTGCCCTCCCTGCCAGGGCTGTG
GAAGGGCAGGGGCTTCCCACCACGAGTGGGCTGCAAGGAAGGCTTCCTGGAGGCAGTGTG
GGTGAGCGCAGCCTTGAGCGTGACAGGAAGATAAGTGTGGAGATGAGGAGGCCCTGTGGG
ACCTGGAGGACAAGCCTGGGCAGAGGTGCCGCAGTGGGCTGAGCCTGGTCTGGTGCTGGC
AGGAGCTGTGTAGCCTACTGGCTGGCGCAGGGCTGCAGCCTGGCCCGACCCTGGCTCTGA
CCCCCCTCTCTGCTGGAGAGAGCCCTGTAGCACCATCTGGATTCTTTCCTCTGATCAAGA
GGGGCCTGAGCTCTGGCTGGATCCAGTTCTAACACTCCTCCTAACCCTGCCCCTGCTGTG
TGACCATCACTCACCCTCTCTGAGCCACACATGGGATAATAACATTTCTCTGATGGAATC
AAGCGAGTTAATAAATGTGAAGTGCCTGCAGGTACAAGACTCATTAGAGAGTAATTTCTT
TTCCTGTCATCCGTCCACAGTCTCACTGCAGAAAAATAGTGTGTTAAAAGAAGAAACTCC
CAGAGTTCCCTGGTGGCTCCATGGGTTAAGGACCTGGCATTGGCTGTGGCTCAGGTCACT
GCTATGATGTGGGTTTGATCCGCTGGCCTGAGAACTTCCACATATTGC

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               192-349, + strand, RNAz p=0.99954
               

               
               417-522, - strand, RNAz p=0.628161
               

               
               606-722, - strand, RNAz p=0.880713

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               192-349, + strand, RNAz p=0.99954
               

               
               417-522, - strand, RNAz p=0.628161
               

               
               606-722, - strand, RNAz p=0.880713

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               37-375, gnl|bosTau2|chr25 (28404296-28404624)
               

               
               37-375, gnl|Hg17|chr7 (73179554-73179876)
               


               
               417-722, gnl|bosTau2|chr25 (28404884-28405209)
               

               
               417-722, gnl|Hg17|chr7 (73179936-73180248)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               37-375, gnl|bosTau2|chr25 (28404296-28404624)
               

               
               37-375, gnl|Hg17|chr7 (73179554-73179876)
               


               
               417-722, gnl|bosTau2|chr25 (28404884-28405209)
               

               
               417-722, gnl|Hg17|chr7 (73179936-73180248)

	192-349, + strand, RNAz p=0.99954
	417-522, - strand, RNAz p=0.628161
	606-722, - strand, RNAz p=0.880713

	37-375, gnl\|bosTau2\|chr25 (28404296-28404624)
	37-375, gnl\|Hg17\|chr7 (73179554-73179876)

	417-722, gnl\|bosTau2\|chr25 (28404884-28405209)
	417-722, gnl\|Hg17\|chr7 (73179936-73180248)