Ss1.1-LyN1-MLN01H120083.5
|
AATAGAATATGTTTTCTTACAGTGGGCCCTGGGGAAAAAGTATGACTAGGTCAGACCCTA
GAAAATTTCCCCAGTTACAAAGAGGGGAGTACCGCTAACTTGACCTTAAATAGTCCAACC
CTGTGGCTTTGGTCTTGCTGCCTAAGCTCTCTATGCTGGCCTTTGATGTCAGTGGTAGAA
TTGTCACAGATGTGGAGAAAATAATCCATTAGGTATTTCATGTAGAGCTCAGCACATATT
CAGAACTTAGCCCGTTATAGCATTATGCCTTTCGTGTGAGAAATACAAACAATTCACTGG
GAAAATATTTTATTTATTGCTAGCTAGCTACACGTTCTATTTCCCTTTCCATGGTGTGAA
AATTTCCCAGAAAGCCTCCTTTTTGGGAGAGAGAGATGCAGAGCTTAGGCCCATCTTCTC
ACTAGTCAACCTAGTACCTCCCTTTCTGTTTCAAGGTCCTTCCTCAAAAGCACAGAACTA
AGTGCAAAGGGAAAGTGAGGGGAAGGGCCAGGGGAGCAGGGAGGGCAGTGGGGGCTTTCC
CTGGTCTTTCCTAATCCTTTGGTTCCAAAGCCTTAGTATTTCAAATTTTTGAAATAAAAT
CTGCCTTTAAAACTAATGCAAATGTTACTCAGTGATTCATCCTTTCCAAATAATTCTTGG
TTTCGTTTGACATTTTATTTTTAAATTATGAATTAACAGTGACATCACTCTCAGCTTACT
GTTACCTCAGCTCCTCACAGTGAACTGTCTTACAAGGACTGTAAAAGTTCAGATTTTTAA
CTATCACCCAGTATCTCCTGGGCTGCCATTGGGCTTTTAAAACTCTGACCTTTTTTCAAT
AAAATTTTTTAAAAATTGAGAAAAAATAGGATCTTTCGGCATACGTTCGCGCCGAAATCA
CGGGGAAAGTATTGGAGGGAGGACTGTGCTTAATTGGGTGTTTCATACAGGGCCTGCAAC
TGAGAGAACTTCACAAGGGGTGTCCCTGCAGTGGTGAACATGACAGTAACCCCGCATCAG
CTCTAAGAAAGTAGACTTAGTTGAGTTTTTTAAAATTGGGGTCAGGGCCGCCTTATATGA
AGTCCATACATTTGAAGGGCAGAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AATAGAATATGTTTTCTTACAGTGGGCCCTGGGGAAAAAGTATGACTAGGTCAGACCCTA
GAAAATTTCCCCAGTTACAAAGAGGGGAGTACCGCTAACTTGACCTTAAATAGTCCAACC
CTGTGGCTTTGGTCTTGCTGCCTAAGCTCTCTATGCTGGCCTTTGATGTCAGTGGTAGAA
TTGTCACAGATGTGGAGAAAATAATCCATTAGGTATTTCATGTAGAGCTCAGCACATATT
CAGAACTTAGCCCGTTATAGCATTATGCCTTTCGTGTGAGAAATACAAACAATTCACTGG
GAAAATATTTTATTTATTGCTAGCTAGCTACACGTTCTATTTCCCTTTCCATGGTGTGAA
AATTTCCCAGAAAGCCTCCTTTTTGGGAGAGAGAGATGCAGAGCTTAGGCCCATCTTCTC
ACTAGTCAACCTAGTACCTCCCTTTCTGTTTCAAGGTCCTTCCTCAAAAGCACAGAACTA
AGTGCAAAGGGAAAGTGAGGGGAAGGGCCAGGGGAGCAGGGAGGGCAGTGGGGGCTTTCC
CTGGTCTTTCCTAATCCTTTGGTTCCAAAGCCTTAGTATTTCAAATTTTTGAAATAAAAT
CTGCCTTTAAAACTAATGCAAATGTTACTCAGTGATTCATCCTTTCCAAATAATTCTTGG
TTTCGTTTGACATTTTATTTTTAAATTATGAATTAACAGTGACATCACTCTCAGCTTACT
GTTACCTCAGCTCCTCACAGTGAACTGTCTTACAAGGACTGTAAAAGTTCAGATTTTTAA
CTATCACCCAGTATCTCCTGGGCTGCCATTGGGCTTTTAAAACTCTGACCTTTTTTCAAT
AAAATTTTTTAAAAATTGAGAAAAAATAGGATCTTTCGGCATACGTTCGCGCCGAAATCA
CGGGGAAAGTATTGGAGGGAGGACTGTGCTTAATTGGGTGTTTCATACAGGGCCTGCAAC
TGAGAGAACTTCACAAGGGGTGTCCCTGCAGTGGTGAACATGACAGTAACCCCGCATCAG
CTCTAAGAAAGTAGACTTAGTTGAGTTTTTTAAAATTGGGGTCAGGGCCGCCTTATATGA
AGTCCATACATTTGAAGGGCAGAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
537-633, + strand, RNAmicro p=0.999999 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
537-633, + strand, RNAmicro p=0.999999 |
|
393-627, CJ008889 full-length enriched swine cDNA library, adult mesenteric
(dbj|CJ008889.1|), blast E-value=0, identity=100% |
|
393-627, CJ010356 full-length enriched swine cDNA library, adult mesenteric
(dbj|CJ010356.1|), blast E-value=0, identity=100% |
|
393-627, CJ014312 full-length enriched swine cDNA library, adult mesenteric
(dbj|CJ014312.1|), blast E-value=0, identity=99.57% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
393-627, CJ008889 full-length enriched swine cDNA library, adult mesenteric
(dbj|CJ008889.1|), blast E-value=0, identity=100% |
|
393-627, CJ010356 full-length enriched swine cDNA library, adult mesenteric
(dbj|CJ010356.1|), blast E-value=0, identity=100% |
|
393-627, CJ014312 full-length enriched swine cDNA library, adult mesenteric
(dbj|CJ014312.1|), blast E-value=0, identity=99.57% |
|
1-834, gnl|bosTau2|chr6 (7302026-7301177) |
|
1-834, gnl|Hg17|chr4 (103799911-103800769) |
| |
|
862-1084, gnl|bosTau2|chr6 (7301192-7300975) |
|
862-1084, gnl|canFam2|chr32 (26868803-26868967) |
|
862-1084, gnl|dasNov1|scaffold_39202 (16303-16472) |
|
862-1084, gnl|echTel1|scaffold_173072 (2073-2240) |
|
862-1084, gnl|hg17|chr4 (103800740-103800895) |
|
862-1084, gnl|Hg17|chr4 (103800754-103800970) |
|
862-1084, gnl|loxAfr1|scaffold_188 (199813-199654) |
|
862-1084, gnl|mm7|chr3 (135464855-135464686) |
|
862-1084, gnl|oryCun1|scaffold_201204 (147313-147140) |
|
862-1084, gnl|panTro1|chr3 (120196038-120196193) |
|
862-1084, gnl|rheMac2|chr5 (95494600-95494758) |
|
862-1084, gnl|rn3|chr2 (233176935-233176774) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-834, gnl|bosTau2|chr6 (7302026-7301177) |
|
1-834, gnl|Hg17|chr4 (103799911-103800769) |
| |
|
862-1084, gnl|bosTau2|chr6 (7301192-7300975) |
|
862-1084, gnl|canFam2|chr32 (26868803-26868967) |
|
862-1084, gnl|dasNov1|scaffold_39202 (16303-16472) |
|
862-1084, gnl|echTel1|scaffold_173072 (2073-2240) |
|
862-1084, gnl|hg17|chr4 (103800740-103800895) |
|
862-1084, gnl|Hg17|chr4 (103800754-103800970) |
|
862-1084, gnl|loxAfr1|scaffold_188 (199813-199654) |
|
862-1084, gnl|mm7|chr3 (135464855-135464686) |
|
862-1084, gnl|oryCun1|scaffold_201204 (147313-147140) |
|
862-1084, gnl|panTro1|chr3 (120196038-120196193) |
|
862-1084, gnl|rheMac2|chr5 (95494600-95494758) |
|
862-1084, gnl|rn3|chr2 (233176935-233176774) |
