Non-Coding RNA Search

Ss1.1-LyN2-AR032E09LN05FE09S.5

Sequence:


               
               GGCCCGGTCTATGTCTTGCAGGTGCCCTTGAGGAGATGGAGGTAGAAGAAAGGCCAAGAG
ACTTGGCCGTCTCTGGCACAGGCCTGAAAACCCAGGGAGAGCAGGATGGGTGAGAGGGGG
TTAATCCCCAGCTCACCTTGGGGCTGGACCTTCAGCCGAAGCCACAGGGCCCCCTTGGTG
CACAGCCTTGACTCTTCCCTGGGGCCCACAGAGCAGGCAGGCTAAGCCAAGCCAGGCTCA
ACTTCGGGGCTCCCGGTGCCCGTGGCTGTGTATGAGAGGTGAGGCCGCAGCGAGAGGCCT
TCCTAGTTAACTAGGGCCAACAGCTGACACCAAGCCTCTGCAATCCAGCAAGGAGCTCTG
GCCCCCACCTGATTCCCCCGTGCACGTCCCCAGACGGACCAGAGGACTCCTAGTTCTAGT
GTGAGCTGGCAGGCAGCTACCACCCCAGGTTCTTCTCTTACCCCAGGCCTGCCTCTTGCG
CTTTCCGGGGGCGTATAAGCTAGTGGCTGGCATCTGGAGCTGACCAGGAGGCCATCAAGG
GCATGGCGATTTCTCAGACCTGAAGCCTGGGGTGCCTCTTGCCAGGATGTCTAAGACACT
TGAATAATTGCTGTTTGCACTTACTGCGCGGTCAGGCCACGTCACTAC------------
GGGGAGNGCGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCCGGTCTATGTCTTGCAGGTGCCCTTGAGGAGATGGAGGTAGAAGAAAGGCCAAGAG
ACTTGGCCGTCTCTGGCACAGGCCTGAAAACCCAGGGAGAGCAGGATGGGTGAGAGGGGG
TTAATCCCCAGCTCACCTTGGGGCTGGACCTTCAGCCGAAGCCACAGGGCCCCCTTGGTG
CACAGCCTTGACTCTTCCCTGGGGCCCACAGAGCAGGCAGGCTAAGCCAAGCCAGGCTCA
ACTTCGGGGCTCCCGGTGCCCGTGGCTGTGTATGAGAGGTGAGGCCGCAGCGAGAGGCCT
TCCTAGTTAACTAGGGCCAACAGCTGACACCAAGCCTCTGCAATCCAGCAAGGAGCTCTG
GCCCCCACCTGATTCCCCCGTGCACGTCCCCAGACGGACCAGAGGACTCCTAGTTCTAGT
GTGAGCTGGCAGGCAGCTACCACCCCAGGTTCTTCTCTTACCCCAGGCCTGCCTCTTGCG
CTTTCCGGGGGCGTATAAGCTAGTGGCTGGCATCTGGAGCTGACCAGGAGGCCATCAAGG
GCATGGCGATTTCTCAGACCTGAAGCCTGGGGTGCCTCTTGCCAGGATGTCTAAGACACT
TGAATAATTGCTGTTTGCACTTACTGCGCGGTCAGGCCACGTCACTAC------------
GGGGAGNGCGAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               7-250, - strand, RNAz p=0.998456

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               7-250, - strand, RNAz p=0.998456

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               7-250, gnl|bosTau2|chr3 (70443417-70443677)
               

               
               7-250, gnl|Hg17|chr1 (45479726-45479440)
               


               
               273-648, gnl|bosTau2|chr3 (70443670-70444040)
               

               
               273-648, gnl|Hg17|chr1 (45479447-45479075)
               

               
               273-648, gnl|Mm7|chr4 (116179782-116180126)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-250, gnl|bosTau2|chr3 (70443417-70443677)
               

               
               7-250, gnl|Hg17|chr1 (45479726-45479440)
               


               
               273-648, gnl|bosTau2|chr3 (70443670-70444040)
               

               
               273-648, gnl|Hg17|chr1 (45479447-45479075)
               

               
               273-648, gnl|Mm7|chr4 (116179782-116180126)

	7-250, gnl\|bosTau2\|chr3 (70443417-70443677)
	7-250, gnl\|Hg17\|chr1 (45479726-45479440)

	273-648, gnl\|bosTau2\|chr3 (70443670-70444040)
	273-648, gnl\|Hg17\|chr1 (45479447-45479075)
	273-648, gnl\|Mm7\|chr4 (116179782-116180126)