Non-Coding RNA Search

Ss1.1-LyN2-AR20D6.5

Sequence:


               
               TTACATCCACAGAAGGGGTGGGAGAATGTCTAAAAATGAAATTCCTTGTCCTAGAGGGAC
AGAATATGCTAATAAAATTTCAAATGCTGGCACAAT------------TTGGTCTTTTTT
CAGACTAATAAAATGAATGGTTGTCATGTTCACTACGAAAAAAAATCTAAATGACTGAAA
TTTATAGAAATGAAAATTGCAAGCAATTATTTAGGGANGCTTTAAATTTTACTTCATTTT
------------GCCATATGCAGTTGCATTTCTTATTGCCAAGATCTAATAGAACTTCTG
GTTTCATTTCTTACCTTTTTTTTTAAATGTGAGTTTGTATTATAATTCATTCCTACGGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTACATCCACAGAAGGGGTGGGAGAATGTCTAAAAATGAAATTCCTTGTCCTAGAGGGAC
AGAATATGCTAATAAAATTTCAAATGCTGGCACAAT------------TTGGTCTTTTTT
CAGACTAATAAAATGAATGGTTGTCATGTTCACTACGAAAAAAAATCTAAATGACTGAAA
TTTATAGAAATGAAAATTGCAAGCAATTATTTAGGGANGCTTTAAATTTTACTTCATTTT
------------GCCATATGCAGTTGCATTTCTTATTGCCAAGATCTAATAGAACTTCTG
GTTTCATTTCTTACCTTTTTTTTTAAATGTGAGTTTGTATTATAATTCATTCCTACGGCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               28-136, - strand, RNAz p=0.995431

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               28-136, - strand, RNAz p=0.995431

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-336, gnl|bosTau2|chr10 (31162020-31162377)
               

               
               1-336, gnl|canFam2|chr30 (30841673-30842076)
               

               
               1-336, gnl|dasNov1|scaffold_16757 (9455-9099)
               

               
               1-336, gnl|galGal2|chr10 (4899497-4899101)
               

               
               1-336, gnl|hg17|chr15 (61346267-61346649)
               

               
               1-336, gnl|Hg17|chr15 (61346300-61346681)
               

               
               1-336, gnl|loxAfr1|scaffold_55894 (14449-14099)
               

               
               1-336, gnl|mm7|chr9 (66875795-66875502)
               

               
               1-336, gnl|monDom2|scaffold_12 (50466932-50466588)
               

               
               1-336, gnl|oryCun1|scaffold_176017 (48468-48838)
               

               
               1-336, gnl|panTro1|chr16 (61803366-61803751)
               

               
               1-336, gnl|rheMac2|chr7 (41640349-41640730)
               

               
               1-336, gnl|rn3|chr8 (71172120-71171827)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-336, gnl|bosTau2|chr10 (31162020-31162377)
               

               
               1-336, gnl|canFam2|chr30 (30841673-30842076)
               

               
               1-336, gnl|dasNov1|scaffold_16757 (9455-9099)
               

               
               1-336, gnl|galGal2|chr10 (4899497-4899101)
               

               
               1-336, gnl|hg17|chr15 (61346267-61346649)
               

               
               1-336, gnl|Hg17|chr15 (61346300-61346681)
               

               
               1-336, gnl|loxAfr1|scaffold_55894 (14449-14099)
               

               
               1-336, gnl|mm7|chr9 (66875795-66875502)
               

               
               1-336, gnl|monDom2|scaffold_12 (50466932-50466588)
               

               
               1-336, gnl|oryCun1|scaffold_176017 (48468-48838)
               

               
               1-336, gnl|panTro1|chr16 (61803366-61803751)
               

               
               1-336, gnl|rheMac2|chr7 (41640349-41640730)
               

               
               1-336, gnl|rn3|chr8 (71172120-71171827)

	1-336, gnl\|bosTau2\|chr10 (31162020-31162377)
	1-336, gnl\|canFam2\|chr30 (30841673-30842076)
	1-336, gnl\|dasNov1\|scaffold_16757 (9455-9099)
	1-336, gnl\|galGal2\|chr10 (4899497-4899101)
	1-336, gnl\|hg17\|chr15 (61346267-61346649)
	1-336, gnl\|Hg17\|chr15 (61346300-61346681)
	1-336, gnl\|loxAfr1\|scaffold_55894 (14449-14099)
	1-336, gnl\|mm7\|chr9 (66875795-66875502)
	1-336, gnl\|monDom2\|scaffold_12 (50466932-50466588)
	1-336, gnl\|oryCun1\|scaffold_176017 (48468-48838)
	1-336, gnl\|panTro1\|chr16 (61803366-61803751)
	1-336, gnl\|rheMac2\|chr7 (41640349-41640730)
	1-336, gnl\|rn3\|chr8 (71172120-71171827)