Non-Coding RNA Search

Ss1.1-Lym1-jns05_F04.r.3

Sequence:


               
               GGCCGCGGCTGGGGTCTCGTCTCCGGTCGGCGCCTTCAGTGCCTCCGCCGGGTTGTGTTC
ATGTTCCGAGGGTGTGACAGGAGCCATGGATCCCGCAGCGTTGATGGAAGCCGTTGTGGA
AGAAGTGGCCTGTCCCATCTGCATGACCTTCCTGAAGGAGCCCGTGAGCATCGACTGTGG
CCACAGCTTCTGCCACAGCTGTCTCTCCGGCCTCTGGGAGGTGCCAGGGGAAGCCCCCAA
CTGGGGTTACTCCTGTCCCCTCTGCCGGGCCCCCGTCCAGCCAAGGAACCTGCGGCCTAA
TTGGCAGCTGGCCAACGTCGCAGAGAAGATCCGACGGCTAGGGCTGCACCCCGGAATGGG
GCTGAAGGGCGACGTGTGTGAGCCCCACGGGCAGCAGCTGAGGATGTTCTGCCAAGAGGA
TGGCCTGCTCATGTGCGAGGCCTGCAGCCGGGCCCCCGAGCACGAGGCCCACCGGGTTCT
GCCCATGGAGGATGTCGCCTGGGACTATAAGTGGAAACTGCACGAGGCCCTGGAGCATCT
GAGGAAAGAGCACGAAGAGGCCTGGAAGCTGGAAGTGGGTGAGAGGAAGCGAACTGCCAA
CTGGAAGATACAGGTGGAAACCCGAAAGCAGAGCATCATGTGGGAGTTTGAGAAATACCG
GCGGTTACTAAAGAAAAAGCAGCCACCAGGTCGGCGGCTGGAGGTCGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCGCGGCTGGGGTCTCGTCTCCGGTCGGCGCCTTCAGTGCCTCCGCCGGGTTGTGTTC
ATGTTCCGAGGGTGTGACAGGAGCCATGGATCCCGCAGCGTTGATGGAAGCCGTTGTGGA
AGAAGTGGCCTGTCCCATCTGCATGACCTTCCTGAAGGAGCCCGTGAGCATCGACTGTGG
CCACAGCTTCTGCCACAGCTGTCTCTCCGGCCTCTGGGAGGTGCCAGGGGAAGCCCCCAA
CTGGGGTTACTCCTGTCCCCTCTGCCGGGCCCCCGTCCAGCCAAGGAACCTGCGGCCTAA
TTGGCAGCTGGCCAACGTCGCAGAGAAGATCCGACGGCTAGGGCTGCACCCCGGAATGGG
GCTGAAGGGCGACGTGTGTGAGCCCCACGGGCAGCAGCTGAGGATGTTCTGCCAAGAGGA
TGGCCTGCTCATGTGCGAGGCCTGCAGCCGGGCCCCCGAGCACGAGGCCCACCGGGTTCT
GCCCATGGAGGATGTCGCCTGGGACTATAAGTGGAAACTGCACGAGGCCCTGGAGCATCT
GAGGAAAGAGCACGAAGAGGCCTGGAAGCTGGAAGTGGGTGAGAGGAAGCGAACTGCCAA
CTGGAAGATACAGGTGGAAACCCGAAAGCAGAGCATCATGTGGGAGTTTGAGAAATACCG
GCGGTTACTAAAGAAAAAGCAGCCACCAGGTCGGCGGCTGGAGGTCGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               147-306, - strand, RNAz p=0.892624

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               147-306, - strand, RNAz p=0.892624

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               142-232, + strand, RNAmicro p=0.916643

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               142-232, + strand, RNAmicro p=0.916643

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               32-511, gnl|bosTau2|chr15 (32060578-32061060)
               

               
               32-511, gnl|Hg17|chr11 (4583368-4582885)
               

               
               32-511, gnl|Mm7|chr7 (98733938-98733474)
               


               
               606-708, gnl|bosTau2|chr15 (32067697-32067799)
               

               
               606-708, gnl|Hg17|chr11 (4580220-4580118)
               

               
               606-708, gnl|Mm7|chr7 (98729825-98729723)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               32-511, gnl|bosTau2|chr15 (32060578-32061060)
               

               
               32-511, gnl|Hg17|chr11 (4583368-4582885)
               

               
               32-511, gnl|Mm7|chr7 (98733938-98733474)
               


               
               606-708, gnl|bosTau2|chr15 (32067697-32067799)
               

               
               606-708, gnl|Hg17|chr11 (4580220-4580118)
               

               
               606-708, gnl|Mm7|chr7 (98729825-98729723)

	32-511, gnl\|bosTau2\|chr15 (32060578-32061060)
	32-511, gnl\|Hg17\|chr11 (4583368-4582885)
	32-511, gnl\|Mm7\|chr7 (98733938-98733474)

	606-708, gnl\|bosTau2\|chr15 (32067697-32067799)
	606-708, gnl\|Hg17\|chr11 (4580220-4580118)
	606-708, gnl\|Mm7\|chr7 (98729825-98729723)