Ss1.1-Lym1-jns118_C06.f.5
|
AACATGTTGAGAAACTGATGAAGCTGCAGAACCAACGAGGTGGCCGAATCTTCCTTCAGG
ATATCAAGAAACCGGAGCGCAATGACTGGAAGAATGGGCTGACTGCCATGGAATGTGCGC
TGCACTTGGAAAAAAACGTGAATCAGTCCCTGCTGGAACTGCACAAACTGGCCACTGACA
AAAATGACCCCCACTTGTGTGACTTCATTGAGACGCATTACCTGGATGAGCAGGTGAAAG
CCATCAAAGAATTGGGTGACCACATTACCAACTTGCACAGGATGGGGGCCCCCGAGTATG
GCATGGCCGAGTATCTCTTTGACAAGCACCCCCTGGGGACCAGTGAGAGTTAAGCCTTAA
GCTGGCCTCCCAAAGACACGGGGTGACCCCCCTGGTCACCAAAGCAGTGCATGCATGTTT
CGGGTTCCCGTCCCCTTTTCTATAAGTCCTACCAGAACATCTACTTCAGTTCTTTCCTTA
GTGTACCATTCCTTCAAATAAAGTAATTTGGTACCC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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AACATGTTGAGAAACTGATGAAGCTGCAGAACCAACGAGGTGGCCGAATCTTCCTTCAGG
ATATCAAGAAACCGGAGCGCAATGACTGGAAGAATGGGCTGACTGCCATGGAATGTGCGC
TGCACTTGGAAAAAAACGTGAATCAGTCCCTGCTGGAACTGCACAAACTGGCCACTGACA
AAAATGACCCCCACTTGTGTGACTTCATTGAGACGCATTACCTGGATGAGCAGGTGAAAG
CCATCAAAGAATTGGGTGACCACATTACCAACTTGCACAGGATGGGGGCCCCCGAGTATG
GCATGGCCGAGTATCTCTTTGACAAGCACCCCCTGGGGACCAGTGAGAGTTAAGCCTTAA
GCTGGCCTCCCAAAGACACGGGGTGACCCCCCTGGTCACCAAAGCAGTGCATGCATGTTT
CGGGTTCCCGTCCCCTTTTCTATAAGTCCTACCAGAACATCTACTTCAGTTCTTTCCTTA
GTGTACCATTCCTTCAAATAAAGTAATTTGGTACCC
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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-516, gnl|bosTau2|chr12 (48464419-48464931) |
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1-516, gnl|canFam2|chr11 (42065999-42066698) |
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1-516, gnl|dasNov1|scaffold_47393 (39904-40518) |
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1-516, gnl|echTel1|scaffold_197242 (2413-3082) |
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1-516, gnl|Hg17|chr13 (22168520-22168001) |
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1-516, gnl|hg17|chr4 (123051116-123051714) |
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1-516, gnl|loxAfr1|scaffold_923 (112079-111443) |
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1-516, gnl|Mm7|chr19 (9664385-9665217) |
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1-516, gnl|mm7|chrX (86131699-86131045) |
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1-516, gnl|monDom2|scaffold_20 (964275-963592) |
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1-516, gnl|oryCun1|scaffold_200015 (3143-3829) |
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1-516, gnl|panTro1|chr3 (139885709-139886307) |
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1-516, gnl|rheMac2|chr5 (114138278-114138883) |
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1-516, gnl|rn3|chr1 (24188888-24189575) |
| |
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8-334, gnl|bosTau2|chr10 (27427394-27427716) |
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8-334, gnl|Hg17|chr7 (45810725-45810392) |
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8-334, gnl|Mm7|chr4 (124949123-124949473) |
| |
|
30-322, gnl|bosTau2|chr10 (49576720-49577014) |
|
30-322, gnl|Hg17|chr7 (45810703-45810390) |
|
30-322, gnl|Mm7|chr4 (124949145-124949475) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-516, gnl|bosTau2|chr12 (48464419-48464931) |
|
1-516, gnl|canFam2|chr11 (42065999-42066698) |
|
1-516, gnl|dasNov1|scaffold_47393 (39904-40518) |
|
1-516, gnl|echTel1|scaffold_197242 (2413-3082) |
|
1-516, gnl|Hg17|chr13 (22168520-22168001) |
|
1-516, gnl|hg17|chr4 (123051116-123051714) |
|
1-516, gnl|loxAfr1|scaffold_923 (112079-111443) |
|
1-516, gnl|Mm7|chr19 (9664385-9665217) |
|
1-516, gnl|mm7|chrX (86131699-86131045) |
|
1-516, gnl|monDom2|scaffold_20 (964275-963592) |
|
1-516, gnl|oryCun1|scaffold_200015 (3143-3829) |
|
1-516, gnl|panTro1|chr3 (139885709-139886307) |
|
1-516, gnl|rheMac2|chr5 (114138278-114138883) |
|
1-516, gnl|rn3|chr1 (24188888-24189575) |
| |
|
8-334, gnl|bosTau2|chr10 (27427394-27427716) |
|
8-334, gnl|Hg17|chr7 (45810725-45810392) |
|
8-334, gnl|Mm7|chr4 (124949123-124949473) |
| |
|
30-322, gnl|bosTau2|chr10 (49576720-49577014) |
|
30-322, gnl|Hg17|chr7 (45810703-45810390) |
|
30-322, gnl|Mm7|chr4 (124949145-124949475) |
