Non-Coding RNA Search

Ss1.1-Lym1-jns11bD05.f.5

Sequence:


               
               GGCCCCGGAAGCCGGCCAGTGCAGGGGACTTGGGGGGTGTGGGAACCGGGCCGGGGCTCC
GCCATTTCCGGCGGGGGAGGGCTACGACTGAGGAAGGGAGGAGAGAGAGGCGGCTCAAGA
TGGCGGCTCCCAGGGCCTCCCGCCCGAGCTTGTAAGTGGGAGCTCCCAGGCAAGGAGTCA
GGGCGGCGGGACTCGGCGGCCTCCAGCTTCTCGGGCCCAGGCGCTCGGCAGTTTCAGGAG
GCTCTTGAGGAGACGGGGTGAGCAAGAAGAAGGGGAAGAGCAGAAGTGAAGGAGAATAGT
TAAGATGGCGGCCTCCATGGAGCCGTCCACCGCTGTGTGAGGAACCGCTTCTCCGTGAGA
GCCGTCTTAGACTAAAGGGGGTGTGTGTGAGTGGAATTGGGGGGCTTCCTTCTCGCTTGG
TGACTTTTTTCCACCGCGCCCTTTCCCGGAACTATGGCTTCGGCCGTGTCACCCGCCAAC
TCGCCAGCGGTGCTCCTGCAGCCTCGCTGGAAGCGAGTGGTGGGCTGGTCGGGTCCAGTA
CCCCGGCCCCGCCACGGCCACCGCGCCGTGGCCATCAAGGAGCTCATCGTGGTGTTTGGC
GGCGGCAACGAGGGGATCGTGGACGAACTGCACGTGTACAACACGGCGACCAACCAGTGG
TTCATCCCCGCCGTGAGGGGGGACATCCCTCCAGGCTGCGCGGCCTATGGCTTCGTGTGC
GACGGGACGCGCCTGCTGGTGTTCGGAGGCATGGTGGAGTACGGGAAATACAGCAACGAC
CTCTACGAGCTGCAGGCGAGCCGATGGGAGTGGAAGAGACTGAAGGCAAAGACGCCCAAA
AACGGGCCCCCTCCGTGTCCTCGGCTCGGGCACAGCTTCTCCCTCGTGGGCAACAAATGT
TACCTGTTCGGAGGTCTGGCCAACGACAGCGAGGACCCCAAGAACAACATTCCCAGGTAC
CTGAATGACTTATACATCCTGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCCCGGAAGCCGGCCAGTGCAGGGGACTTGGGGGGTGTGGGAACCGGGCCGGGGCTCC
GCCATTTCCGGCGGGGGAGGGCTACGACTGAGGAAGGGAGGAGAGAGAGGCGGCTCAAGA
TGGCGGCTCCCAGGGCCTCCCGCCCGAGCTTGTAAGTGGGAGCTCCCAGGCAAGGAGTCA
GGGCGGCGGGACTCGGCGGCCTCCAGCTTCTCGGGCCCAGGCGCTCGGCAGTTTCAGGAG
GCTCTTGAGGAGACGGGGTGAGCAAGAAGAAGGGGAAGAGCAGAAGTGAAGGAGAATAGT
TAAGATGGCGGCCTCCATGGAGCCGTCCACCGCTGTGTGAGGAACCGCTTCTCCGTGAGA
GCCGTCTTAGACTAAAGGGGGTGTGTGTGAGTGGAATTGGGGGGCTTCCTTCTCGCTTGG
TGACTTTTTTCCACCGCGCCCTTTCCCGGAACTATGGCTTCGGCCGTGTCACCCGCCAAC
TCGCCAGCGGTGCTCCTGCAGCCTCGCTGGAAGCGAGTGGTGGGCTGGTCGGGTCCAGTA
CCCCGGCCCCGCCACGGCCACCGCGCCGTGGCCATCAAGGAGCTCATCGTGGTGTTTGGC
GGCGGCAACGAGGGGATCGTGGACGAACTGCACGTGTACAACACGGCGACCAACCAGTGG
TTCATCCCCGCCGTGAGGGGGGACATCCCTCCAGGCTGCGCGGCCTATGGCTTCGTGTGC
GACGGGACGCGCCTGCTGGTGTTCGGAGGCATGGTGGAGTACGGGAAATACAGCAACGAC
CTCTACGAGCTGCAGGCGAGCCGATGGGAGTGGAAGAGACTGAAGGCAAAGACGCCCAAA
AACGGGCCCCCTCCGTGTCCTCGGCTCGGGCACAGCTTCTCCCTCGTGGGCAACAAATGT
TACCTGTTCGGAGGTCTGGCCAACGACAGCGAGGACCCCAAGAACAACATTCCCAGGTAC
CTGAATGACTTATACATCCTGGAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|26353934|dbj|BAC40597.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26353934|dbj|BAC40597.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               440-559, no strand, RNAz p=0.97939
               

               
               791-950, - strand, RNAz p=0.778204

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               440-559, no strand, RNAz p=0.97939
               

               
               791-950, - strand, RNAz p=0.778204

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               2-646, gnl|bosTau2|chr7 (6363090-6362444)
               

               
               2-646, gnl|Hg17|chrX (152757587-152756946)
               

               
               2-646, gnl|Mm7|chrX (69353095-69352460)
               


               
               791-958, gnl|bosTau2|chr7 (6340683-6340516)
               

               
               791-958, gnl|canFam2|chrX (124851481-124851656)
               

               
               791-958, gnl|danRer3|chr11 (25717545-25717710)
               

               
               791-958, gnl|dasNov1|scaffold_35974 (3902-3727)
               

               
               791-958, gnl|echTel1|scaffold_307943 (3651-3476)
               

               
               791-958, gnl|fr1|chrUn (4158777-4158947)
               

               
               791-958, gnl|hg17|chrX (152750416-152750591)
               

               
               791-958, gnl|Hg17|chrX (152750587-152750420)
               

               
               791-958, gnl|loxAfr1|scaffold_39344 (15135-15310)
               

               
               791-958, gnl|mm7|chrX (69345766-69345941)
               

               
               791-958, gnl|Mm7|chrX (69345937-69345770)
               

               
               791-958, gnl|monDom2|scaffold_216 (77384-77579)
               

               
               791-958, gnl|oryCun1|scaffold_214775 (22364-22189)
               

               
               791-958, gnl|panTro1|chrX (158069394-158069569)
               

               
               791-958, gnl|rheMac2|chrX (152085484-152085659)
               

               
               791-958, gnl|rn3|chrX (159968019-159968194)
               

               
               791-958, gnl|tetNig1|chr11 (9269207-9269376)
               

               
               791-958, gnl|xenTro1|scaffold_257 (423011-422835)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-646, gnl|bosTau2|chr7 (6363090-6362444)
               

               
               2-646, gnl|Hg17|chrX (152757587-152756946)
               

               
               2-646, gnl|Mm7|chrX (69353095-69352460)
               


               
               791-958, gnl|bosTau2|chr7 (6340683-6340516)
               

               
               791-958, gnl|canFam2|chrX (124851481-124851656)
               

               
               791-958, gnl|danRer3|chr11 (25717545-25717710)
               

               
               791-958, gnl|dasNov1|scaffold_35974 (3902-3727)
               

               
               791-958, gnl|echTel1|scaffold_307943 (3651-3476)
               

               
               791-958, gnl|fr1|chrUn (4158777-4158947)
               

               
               791-958, gnl|hg17|chrX (152750416-152750591)
               

               
               791-958, gnl|Hg17|chrX (152750587-152750420)
               

               
               791-958, gnl|loxAfr1|scaffold_39344 (15135-15310)
               

               
               791-958, gnl|mm7|chrX (69345766-69345941)
               

               
               791-958, gnl|Mm7|chrX (69345937-69345770)
               

               
               791-958, gnl|monDom2|scaffold_216 (77384-77579)
               

               
               791-958, gnl|oryCun1|scaffold_214775 (22364-22189)
               

               
               791-958, gnl|panTro1|chrX (158069394-158069569)
               

               
               791-958, gnl|rheMac2|chrX (152085484-152085659)
               

               
               791-958, gnl|rn3|chrX (159968019-159968194)
               

               
               791-958, gnl|tetNig1|chr11 (9269207-9269376)
               

               
               791-958, gnl|xenTro1|scaffold_257 (423011-422835)

	440-559, no strand, RNAz p=0.97939
	791-950, - strand, RNAz p=0.778204

	2-646, gnl\|bosTau2\|chr7 (6363090-6362444)
	2-646, gnl\|Hg17\|chrX (152757587-152756946)
	2-646, gnl\|Mm7\|chrX (69353095-69352460)

	791-958, gnl\|bosTau2\|chr7 (6340683-6340516)
	791-958, gnl\|canFam2\|chrX (124851481-124851656)
	791-958, gnl\|danRer3\|chr11 (25717545-25717710)
	791-958, gnl\|dasNov1\|scaffold_35974 (3902-3727)
	791-958, gnl\|echTel1\|scaffold_307943 (3651-3476)
	791-958, gnl\|fr1\|chrUn (4158777-4158947)
	791-958, gnl\|hg17\|chrX (152750416-152750591)
	791-958, gnl\|Hg17\|chrX (152750587-152750420)
	791-958, gnl\|loxAfr1\|scaffold_39344 (15135-15310)
	791-958, gnl\|mm7\|chrX (69345766-69345941)
	791-958, gnl\|Mm7\|chrX (69345937-69345770)
	791-958, gnl\|monDom2\|scaffold_216 (77384-77579)
	791-958, gnl\|oryCun1\|scaffold_214775 (22364-22189)
	791-958, gnl\|panTro1\|chrX (158069394-158069569)
	791-958, gnl\|rheMac2\|chrX (152085484-152085659)
	791-958, gnl\|rn3\|chrX (159968019-159968194)
	791-958, gnl\|tetNig1\|chr11 (9269207-9269376)
	791-958, gnl\|xenTro1\|scaffold_257 (423011-422835)