Non-Coding RNA Search

Ss1.1-Lym1-jns55_B02.f.5

Sequence:


               
               GTTCTAGATCGCGACTGGAGTTTTTTTTTTTTTTTTTTTTGGAACAAAGAAAGATTATAT
TTCATCACTTAAGGTTTCACAGAGATGACATAAGTTTACAATTCAAATTCCCACCTCCTG
TAAAAACAACTTCTTAAATAACTTTCAAAAACCACAAATGCAGTAATCTGAAATTATTCT
ACAAAACTTTAGAGAATATTCAACTACTACAATCAATGTTCACTGTGAGGAATACATAGC
TATATAAAATACAGCTACACAAAAACAGAAGTCAGTGAAAAATAACATTTTTTAAAGCAA
GAAAGATGCTTGTTTGGGATTCACATCAGTAGTGGCTAATTGGGCAAATGCTAAAAATTT
ACATTAAAGTGCTTGAAGAATTACTGCACAGAAATTAAATTACTAAAAATCTTTGCTCAG
ATGCTTTTCAGGCTTATTAAAGATGAGATGACATATGAACCGCCAATAGTGGTCTTTAAA
CCCCAACCACTTTCAAGATAACACATACAGCTGTTAAGACATTCCGTGAGTTCATTGATA
CTACAAATGGTATTAAAAAAAAAAAAAAAGACCTCATACAATCTGCTGGCATTTCATACC
AACCTTTGGAGGAGGTAGTAATATAAAGTGTTGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCTAGATCGCGACTGGAGTTTTTTTTTTTTTTTTTTTTGGAACAAAGAAAGATTATAT
TTCATCACTTAAGGTTTCACAGAGATGACATAAGTTTACAATTCAAATTCCCACCTCCTG
TAAAAACAACTTCTTAAATAACTTTCAAAAACCACAAATGCAGTAATCTGAAATTATTCT
ACAAAACTTTAGAGAATATTCAACTACTACAATCAATGTTCACTGTGAGGAATACATAGC
TATATAAAATACAGCTACACAAAAACAGAAGTCAGTGAAAAATAACATTTTTTAAAGCAA
GAAAGATGCTTGTTTGGGATTCACATCAGTAGTGGCTAATTGGGCAAATGCTAAAAATTT
ACATTAAAGTGCTTGAAGAATTACTGCACAGAAATTAAATTACTAAAAATCTTTGCTCAG
ATGCTTTTCAGGCTTATTAAAGATGAGATGACATATGAACCGCCAATAGTGGTCTTTAAA
CCCCAACCACTTTCAAGATAACACATACAGCTGTTAAGACATTCCGTGAGTTCATTGATA
CTACAAATGGTATTAAAAAAAAAAAAAAAGACCTCATACAATCTGCTGGCATTTCATACC
AACCTTTGGAGGAGGTAGTAATATAAAGTGTTGGAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               146-259, - strand, RNAz p=0.986354

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               146-259, - strand, RNAz p=0.986354

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_024713, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_024713, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               112-621, gnl|bosTau2|chr10 (17424077-17423560)
               

               
               112-621, gnl|Hg17|chr15 (32220240-32220757)
               

               
               112-621, gnl|Mm7|chr2 (112264213-112263715)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               112-621, gnl|bosTau2|chr10 (17424077-17423560)
               

               
               112-621, gnl|Hg17|chr15 (32220240-32220757)
               

               
               112-621, gnl|Mm7|chr2 (112264213-112263715)

	112-621, gnl\|bosTau2\|chr10 (17424077-17423560)
	112-621, gnl\|Hg17\|chr15 (32220240-32220757)
	112-621, gnl\|Mm7\|chr2 (112264213-112263715)