Non-Coding RNA Search

Ss1.1-Lym1-jns57_A02.f.5

Sequence:


               
               GCGGCCGCGCAGCGGACCCTGTGCGCACCGTCTTGAGAGGCGCCCCGCGAACGGGGGAGA
CAGCAGAGCCGCAGGCCATGTCCCATGAAAAGAGTTTCCTGGTGTCTGCGGACAGCTACC
CTCCCCCCAACCCGGGCTATCCTGGGGGGCCCCAGCCCTCCATGCCTCCCTACCCAGGGG
CCCCTTACCCACAGCCCACATTCCAGCCTTCCCCCTATGGCCAGCCAGGATATCCGCAGG
GCCCCAGCCCCTACCCCCAAGGCGGCTACCCCCAAGGGGGCTACCCCCAAGGGGGCTACC
CCCAGGGCCCCTACCCCCAAGGGGGCTACCCTCAGGGGCCATATCCGCAGAGCCCCTTTC
CCCCCAACCCCTATGGACAACCACAAGTCTTCCCGGTACAGGACCCTGGCTCACCCGAGC
ATGGGAACTATCACGAGGAGGGGCCCCCGTCCTACTACGACAACCAGGACTTCCCTGCCA
CCAACTGGGATGACAAGAGCATCCGCCAGGCCTTCATCCGGAAGGTGTTCCTGGTGCTGA
CGCTGCAGCTGTCTGTGACTCTGTCCACCGTGGCCGTGTTCACCTTCGTCGGGGAGGTGA
AGGGCTTCGTCCGGAAGAACGTGTGGACCTACTACGTCTCCTACGCCGTCTTCTTCATCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCCGCGCAGCGGACCCTGTGCGCACCGTCTTGAGAGGCGCCCCGCGAACGGGGGAGA
CAGCAGAGCCGCAGGCCATGTCCCATGAAAAGAGTTTCCTGGTGTCTGCGGACAGCTACC
CTCCCCCCAACCCGGGCTATCCTGGGGGGCCCCAGCCCTCCATGCCTCCCTACCCAGGGG
CCCCTTACCCACAGCCCACATTCCAGCCTTCCCCCTATGGCCAGCCAGGATATCCGCAGG
GCCCCAGCCCCTACCCCCAAGGCGGCTACCCCCAAGGGGGCTACCCCCAAGGGGGCTACC
CCCAGGGCCCCTACCCCCAAGGGGGCTACCCTCAGGGGCCATATCCGCAGAGCCCCTTTC
CCCCCAACCCCTATGGACAACCACAAGTCTTCCCGGTACAGGACCCTGGCTCACCCGAGC
ATGGGAACTATCACGAGGAGGGGCCCCCGTCCTACTACGACAACCAGGACTTCCCTGCCA
CCAACTGGGATGACAAGAGCATCCGCCAGGCCTTCATCCGGAAGGTGTTCCTGGTGCTGA
CGCTGCAGCTGTCTGTGACTCTGTCCACCGTGGCCGTGTTCACCTTCGTCGGGGAGGTGA
AGGGCTTCGTCCGGAAGAACGTGTGGACCTACTACGTCTCCTACGCCGTCTTCTTCATCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q7Z429_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q7Z429_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               53-346, - strand, RNAz p=0.999308

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               53-346, - strand, RNAz p=0.999308

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               123-352, - strand, RNAmicro p=0.983175

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               123-352, - strand, RNAmicro p=0.983175

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               73-246, 4110743 BARC 9BOV Bos taurus cDNA clone 9BOV39_O22 3', mRNA 
(gb|CK978922.1|), blast E-value=0, identity=91.38% 
               

               
               73-246, 4112161 BARC 9BOV Bos taurus cDNA clone 9BOV41_J24 3', mRNA 
(gb|CK980443.1|), blast E-value=0, identity=91.38% 
               

               
               73-246, LB00488.CR_N18 GC_BGC-04 Bos taurus cDNA clone IMAGE (gb|DT849873.1|), 
blast E-value=0, identity=91.38% 
               

               
               73-246, LB0199.CR_F01 GC_BGC-19 Bos taurus cDNA clone IMAGE (gb|DV835646.1|), 
blast E-value=0, identity=91.38% 
               

               
               73-246, LB01824.CR_G03 GC_BGC-18 Bos taurus cDNA clone IMAGE (gb|EE224280.1|), 
blast E-value=0, identity=91.38% 
               

               
               73-246, LB02943.CR_O20 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE352962.1|), 
blast E-value=0, identity=91.38%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               73-246, 4110743 BARC 9BOV Bos taurus cDNA clone 9BOV39_O22 3', mRNA 
(gb|CK978922.1|), blast E-value=0, identity=91.38% 
               

               
               73-246, 4112161 BARC 9BOV Bos taurus cDNA clone 9BOV41_J24 3', mRNA 
(gb|CK980443.1|), blast E-value=0, identity=91.38% 
               

               
               73-246, LB00488.CR_N18 GC_BGC-04 Bos taurus cDNA clone IMAGE (gb|DT849873.1|), 
blast E-value=0, identity=91.38% 
               

               
               73-246, LB0199.CR_F01 GC_BGC-19 Bos taurus cDNA clone IMAGE (gb|DV835646.1|), 
blast E-value=0, identity=91.38% 
               

               
               73-246, LB01824.CR_G03 GC_BGC-18 Bos taurus cDNA clone IMAGE (gb|EE224280.1|), 
blast E-value=0, identity=91.38% 
               

               
               73-246, LB02943.CR_O20 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE352962.1|), 
blast E-value=0, identity=91.38%

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               53-346, gnl|bosTau2|chr14 (229550-229257)
               

               
               53-346, gnl|Hg17|chr8 (145137355-145137663)
               


               
               510-660, gnl|bosTau2|chr14 (228915-228766)
               

               
               510-660, gnl|Hg17|chr8 (145138021-145138169)
               

               
               510-660, gnl|Mm7|chr15 (76330987-76331136)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               53-346, gnl|bosTau2|chr14 (229550-229257)
               

               
               53-346, gnl|Hg17|chr8 (145137355-145137663)
               


               
               510-660, gnl|bosTau2|chr14 (228915-228766)
               

               
               510-660, gnl|Hg17|chr8 (145138021-145138169)
               

               
               510-660, gnl|Mm7|chr15 (76330987-76331136)

	73-246, 4110743 BARC 9BOV Bos taurus cDNA clone 9BOV39_O22 3', mRNA (gb\|CK978922.1\|), blast E-value=0, identity=91.38%
	73-246, 4112161 BARC 9BOV Bos taurus cDNA clone 9BOV41_J24 3', mRNA (gb\|CK980443.1\|), blast E-value=0, identity=91.38%
	73-246, LB00488.CR_N18 GC_BGC-04 Bos taurus cDNA clone IMAGE (gb\|DT849873.1\|), blast E-value=0, identity=91.38%
	73-246, LB0199.CR_F01 GC_BGC-19 Bos taurus cDNA clone IMAGE (gb\|DV835646.1\|), blast E-value=0, identity=91.38%
	73-246, LB01824.CR_G03 GC_BGC-18 Bos taurus cDNA clone IMAGE (gb\|EE224280.1\|), blast E-value=0, identity=91.38%
	73-246, LB02943.CR_O20 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb\|EE352962.1\|), blast E-value=0, identity=91.38%

	53-346, gnl\|bosTau2\|chr14 (229550-229257)
	53-346, gnl\|Hg17\|chr8 (145137355-145137663)

	510-660, gnl\|bosTau2\|chr14 (228915-228766)
	510-660, gnl\|Hg17\|chr8 (145138021-145138169)
	510-660, gnl\|Mm7\|chr15 (76330987-76331136)